Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01835 ATGGATAAGGGGGTGCCACCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTCCAACAAGAGCAGGGGAAAGGGAAGAATGCCAAATTAGAGGATTCTAAACCAATTAAGATTATTTCAGGGTCTTTGTCTCCCAATCCTTCCATTACCAAAACGTCTGTGGACATGAAGGTTAGTGATACAAGGAAAACATCCCAGTGTGCTTCAGGTGGCAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTTGTACCACCCCCTGTTAAGTTGAGTGCTGATGAGGATGAAGAAGAAGCAGAAACTGGGTATACTTCAACTGATGCACCTCTAAAACGACAAAAGTTAGGCCAGGATGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTTACACGTCAAAAAAATCCTGGGGATACACCTTTCAAATTTTTATTTGATGAGAGATGTGCTGAATACAAGTATTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCACAGTCAAGGGAATCACAGGTGCCTCGAAATGGGGGTACAAGCACTTCATCTTCCAAACAGACTAGTGGTCATCAAAGATCATCTCAGCAGCATGCATCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATCTTCATTTCAAACATCTTCAGTAGGAATCAGTGAAGAACCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAAGTACAAACAACCGAAGTATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGTAAAAAGGGCCATCACATGGGTGATTTCATCCCTCCAGACGAACTTGAGAAGTTCTTGGCTAGCTGTAATGATGCTGCAGCACAGAAAGCTGCTAAGGAGACTGTGGAGAGAGCCAAGATTCAGGCTGATAATGTGGGCCACAGACTTCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGAGGATCCAGGAAGGGTATTTCGGATCCTATAATGGCAGGTAGTGTTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGACTTCTGAGGATGACATATACGAGCAGTACAAGAAGCGAATGATGCTCGGTTACCGCTACAGACCCAATCCTCTGAACAATCCTCGAAAGGCTTATTACTGA 1311 0.4386 MDKGVPPSLFVNDGSFMERFKQLQQEQGKGKNAKLEDSKPIKIISGSLSPNPSITKTSVDMKVSDTRKTSQCASGGKLAFSLKQKSKLVPPPVKLSADEDEEEAETGYTSTDAPLKRQKLGQDGIDQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQSRESQVPRNGGTSTSSSKQTSGHQRSSQQHASYQIPASALYESADNPRASGSSFQTSSVGISEEPSGSSNADSLALMEFYMKKAAREEKYKQPKYSKDEMPPPASLQGKKGHHMGDFIPPDELEKFLASCNDAAAQKAAKETVERAKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGSVKKNNLGVGAQEPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01835 436 Pfam G-patch domain 354 397 IPR000467 GO:0003676
Spst5g01835 436 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 436 IPR040169 -
Spst5g01835 436 SMART G-patch_5 351 398 IPR000467 GO:0003676
Spst5g01835 436 MobiDBLite consensus disorder prediction 111 136 - -
Spst5g01835 436 ProSiteProfiles G-patch domain profile. 353 400 IPR000467 GO:0003676
Spst5g01835 436 MobiDBLite consensus disorder prediction 248 273 - -
Spst5g01835 436 SUPERFAMILY Surp module (SWAP domain) 131 198 IPR035967 GO:0003723|GO:0006396
Spst5g01835 436 MobiDBLite consensus disorder prediction 44 76 - -
Spst5g01835 436 Pfam Surp module 146 195 IPR000061 GO:0003723|GO:0006396
Spst5g01835 436 MobiDBLite consensus disorder prediction 88 145 - -
Spst5g01835 436 Gene3D Surp module 97 204 IPR035967 GO:0003723|GO:0006396
Spst5g01835 436 SMART surpneu2 145 199 IPR000061 GO:0003723|GO:0006396
Spst5g01835 436 MobiDBLite consensus disorder prediction 200 273 - -
Spst5g01835 436 MobiDBLite consensus disorder prediction 23 76 - -
Spst5g01835 436 ProSiteProfiles SURP motif repeat profile. 147 190 IPR000061 GO:0003723|GO:0006396
Spst5g01835 436 MobiDBLite consensus disorder prediction 292 319 - -
Spst5g01835 436 MobiDBLite consensus disorder prediction 200 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01835 Spst-Chr5 54091584 54096031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01835 298 409 C2H2 Transcription Factor Family AT5G26610 35.043 1.47e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01835 K13096 - gmx:100786213 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01835 5 54091584 54096031 Spst5g01835 5 54091584 54096031 ECH