Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01828 ATGAGCATCAACGATCTCCACTATCACCTTCATATCCTTTTCTTCCTTGTATCTATGCCACAGCAAGCTAAGGCTTATATGGCTATCAACAAAACCTTCCAACTACTCAAAACATTAGGGTTTTTGGAAGGGGTTTTAGGACTGTTGCTCGCAACTAGAAATCCTCAATTCTCCTTCCAAAGATTTGACATTTCTCATCCAAGGCTCCAAATGCTTCGCTCCAATGGCGTTCGGCTCTTACGATCGCTGCCTGCTAAATTCCTCAGCCACGCCGACGACACTATATGTGAAGGAGTATGCCAAAGGGGTTATAGGATATTGAGTTCAGGACTTTGTAATCCATCCAGAGTTACCGGAAAATTTTCTCCAAATGGAGATGATATTACTTTGAAGAACTGGTTGCCATATGGAGCAGCTAATACATATTGGGGGACATCTAGATCCATTCATGGGTCAGCATCATTGGCTAGAGACTATTATGACGTTCTTGGTGTTAGCAAGAATGCAAGTTCTTCGGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTGAAGCTGAAAAGAAGTTTCAAGAAGTTTCAGTGGCATATGAGGTTTTGAAGGACGAAGAAAAGCGTCAACAGTATGATCAGATTGGCCATAATGCATATGTAAACCAACAAAGCACTGGTTTTGGAGGCGACAGCGGCTTTAATCCATTTGAGCAGATGTTCCGTGATCATGATTTTGTCAAGAGTTTTTTTCATCAGAATATTGGTGGAGAAGATGTCAAGACTTTTATTGAACTATCTTTTATGGAAGCTGTACGAGGATGCACCAAAAATATTACATTTCAAACAGAAGTTCTCTGTAACACTTGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACTTGTAAGCGGTGTAAAGGGTCAGGCGTGACATTCGTACAAACTGGCATATTTAGGATGGAGAGTACATGTGGTACATGTAAGGGAACTGGAAAAATTGTATCGAATTTCTGCAAGTTATGCAAAGGTGCAAAGGTTATCAAAGGAACAAAATCAGTCAAATTGGATATTATGGCTGGGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAACCCTGGTGATCTTTACGTTACTATCAAGGTTAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTGATATTCATGTAGATGCTGTCTTAAGTATCACTCAGGCAATTTTGGGTGGAACCATTCAGGTCCCAACTCTTACCGGAGATGTTGTTCTTAAGGTTCGTCCTGGCACCCAACCTGGTCAAAAGGTGGTTCTGAAAAAGAAAGGGATGAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTAACGTCAGCATTCCAAACAACCTGACAGAGAGGCAGCGGGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGGGATTTTGATAAACAGAGAGCTGCAGCTGCTTCTGGTTGA 1539 0.4146 MSINDLHYHLHILFFLVSMPQQAKAYMAINKTFQLLKTLGFLEGVLGLLLATRNPQFSFQRFDISHPRLQMLRSNGVRLLRSLPAKFLSHADDTICEGVCQRGYRILSSGLCNPSRVTGKFSPNGDDITLKNWLPYGAANTYWGTSRSIHGSASLARDYYDVLGVSKNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSVAYEVLKDEEKRQQYDQIGHNAYVNQQSTGFGGDSGFNPFEQMFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVRGCTKNITFQTEVLCNTCGGSGVPPGTRPETCKRCKGSGVTFVQTGIFRMESTCGTCKGTGKIVSNFCKLCKGAKVIKGTKSVKLDIMAGIDNNETIKVYRSGGADPDGDNPGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGMKTKNSYTFGDQYVHFNVSIPNNLTERQRELIEEFAKEEQGDFDKQRAAAASG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01828 512 ProSiteProfiles dnaJ domain profile. 158 223 IPR001623 -
Spst5g01828 512 FunFam Chaperone protein dnaJ GFA2, mitochondrial 155 266 - -
Spst5g01828 512 Hamap Chaperone protein DnaJ [dnaJ]. 155 508 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Spst5g01828 512 FunFam Chaperone protein dnaJ 1, mitochondrial 401 507 - -
Spst5g01828 512 PRINTS DnaJ domain signature 160 178 IPR001623 -
Spst5g01828 512 PRINTS DnaJ domain signature 178 193 IPR001623 -
Spst5g01828 512 PRINTS DnaJ domain signature 215 234 IPR001623 -
Spst5g01828 512 PRINTS DnaJ domain signature 195 215 IPR001623 -
Spst5g01828 512 SUPERFAMILY HSP40/DnaJ peptide-binding domain 405 491 IPR008971 GO:0006457|GO:0051082
Spst5g01828 512 FunFam Molecular chaperone DnaJ 286 359 - -
Spst5g01828 512 Pfam DnaJ C terminal domain 270 480 IPR002939 -
Spst5g01828 512 Pfam DnaJ central domain 294 354 IPR001305 GO:0031072|GO:0051082
Spst5g01828 512 ProSiteProfiles Zinc finger CR-type profile. 281 359 IPR001305 GO:0031072|GO:0051082
Spst5g01828 512 CDD DnaJ_C 265 483 - -
Spst5g01828 512 Gene3D - 267 396 - -
Spst5g01828 512 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 281 356 IPR036410 -
Spst5g01828 512 ProSitePatterns Nt-dnaJ domain signature. 200 219 IPR018253 -
Spst5g01828 512 Gene3D - 402 509 - -
Spst5g01828 512 CDD DnaJ_zf 294 354 IPR001305 GO:0031072|GO:0051082
Spst5g01828 512 Gene3D DnaJ domain 155 266 IPR036869 -
Spst5g01828 512 CDD DnaJ 158 212 IPR001623 -
Spst5g01828 512 Pfam DnaJ domain 158 220 IPR001623 -
Spst5g01828 512 SUPERFAMILY Chaperone J-domain 157 259 IPR036869 -
Spst5g01828 512 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 122 503 - -
Spst5g01828 512 SMART dnaj_3 157 215 IPR001623 -
Spst5g01828 512 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 402 IPR008971 GO:0006457|GO:0051082
Spst5g01828 512 Gene3D - 294 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01828 Spst-Chr5 54015906 54025525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01828 151 220 C2H2 Transcription Factor Family AT1G74250 42.667 9.97e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01828 K03686 - gmx:100815834 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01828 5 54015906 54025525 Spst5g01828 5 54015906 54025525 ECH