Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01821 ATGGCTTCTCTTCATTCTTCTCTTTTGTTGCCGCCGAATCTGTTTTCCCTCACTACCCCATCAAGTTCCCCTAGGCACATTCTCTTGAACCTGAGACCCTCCACGACTCACTTGCGACCCCTTCTCACTACACGCCGCCGTTTTGGGAAACCCTTGGCGGTGGCTGAGCAGGCCACTGCGGCGGAGGCCGAGAGGAGGCTCTACGTAGGCAACATTCCCCGCACTGTCAACAACGATGAGCTCGCCAATATTGTTCAAGAACATGGTGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGTCGCCGCTTTGCATTTGTTACGATGAAAACTGTGGAGGATGCAAATGCTGTGATTGAGAAACTTAATGGCACTGAACTTGGAGGGCGTGAGATCAAAGTAAATGTTACTGAAAAACCTTTATCAACATCAGATTTTCCTTTACTCCAAGCTGAGGAATCTCAATTTGTTGACAGTCCCCACAAGGTGTATGTGGGAAATCTAGCCAAGACAGTGACAACTGATACTCTTAAGAAGTTTTTCTCTGAGAAGGGAAAAGTTTTGAGTGCCAAGGTTTCAAGGGTCCCTGGTACCTCAAAATCCAGTGGGTATGGTTTTGTTACTTTTTCATCAGAAGAGGATGTAGAAGCTGCAATCTCGTCTTTCAACAATTCTTCTTTAGAAGGACAAAAAATCCGAGTGAACAAGGCATAG 726 0.4573 MASLHSSLLLPPNLFSLTTPSSSPRHILLNLRPSTTHLRPLLTTRRRFGKPLAVAEQATAAEAERRLYVGNIPRTVNNDELANIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTELGGREIKVNVTEKPLSTSDFPLLQAEESQFVDSPHKVYVGNLAKTVTTDTLKKFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSSLEGQKIRVNKA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01821 241 Gene3D - 153 241 IPR012677 -
Spst5g01821 241 SUPERFAMILY RNA-binding domain, RBD 60 143 IPR035979 GO:0003676
Spst5g01821 241 CDD RRM2_PSRP2 163 241 - -
Spst5g01821 241 PANTHER OS02G0815200 PROTEIN 60 240 - -
Spst5g01821 241 SUPERFAMILY RNA-binding domain, RBD 159 241 IPR035979 GO:0003676
Spst5g01821 241 SMART rrm1_1 66 139 IPR000504 GO:0003723
Spst5g01821 241 SMART rrm1_1 166 239 IPR000504 GO:0003723
Spst5g01821 241 FunFam 30S ribosomal protein 2, chloroplastic 152 241 - -
Spst5g01821 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Spst5g01821 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 237 IPR000504 GO:0003723
Spst5g01821 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Spst5g01821 241 CDD RRM1_PSRP2_like 66 145 - -
Spst5g01821 241 Gene3D - 50 151 IPR012677 -
Spst5g01821 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 241 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01821 Spst-Chr5 53980306 53982746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01821 67 241 Eukaryotic Initiation Factors Gene Family AT2G23350 33.146 1.06e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01821 K13126 - gmx:100783567 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01821 5 53980306 53982746 Spst5g01821 5 53980306 53982746 ECH