LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst5g01818	ATGGTTATGATGGGAACATGCGTTTCACAATTGGAGCAGAATTCAAAGTTGGAAGCAATGTTCATGCTGAGAGCTTTTCTCAACTGCTTTATGTTCTTCACAACTTCGTCTTCATCCTTCGACTCTGATGATGCAGAGAATACTGTTGATTTGGAAATCGCTAGAAGCTCACCAAAACCCACTGAAAATTCAAGTGCTGTTCATCAAAATCATAAGAAGAAGCATTATTCTCATATTATCATGGGGAAGTTATCAACCACGTTGCTGGGAAAGTTCAAGAATCGCAAGGAATCATCATGGCCATTAACAAAATGTTTTGATCACATTAATCGTAGAGATAGTGGAATGGGAATTGCACAAAATTGGAATGTTGAATTTTCTCATCTCTTCATTGGGTACAAGTTTTCTCATGGTGCTCATAGTCAAATTTACCATGGTATATACAAAGCGCGACATGTTGCTATCAAAATTTTCAAGGTACCAGAATGCGAGGAAAAGAAAACCATTAGATCTCTCTTAGAGACACAATTTTCGAGAGAAGTCACACATCTTCCTCGTCTCCACCATCAAAATGTGGTGAGTTTCATAGCAGCATACAAAGACACCAATTCTTTTTGCATTCTCACGGAGTATCAACAAAAGGGGTCTTTAAGGGCACATTTGAACAAGTTTGAGTCCAAGCCAATTCCGCTCGAGAATGTGCTAGCTTTTGCTTTGGATATTGCTCGTGGAATGGAGTATATACATGCTCAAGGTATCATTCATAGAGACCTTAAACCTGAAAATATCCTTGTTGATTGGGACTCTCATCTCAAAATAGCTGATTTTGGCATTGCTTGTGAGGCCTCAAAGTGTGACTCATTGTGGGGTACATATCGTTGGATGGCACCAGAGATGATCAAAGGCAAGTGTTATGGGAGGAAGGTTGATGTGTACAGTTTTGGGCTTATTTTGTGGGAGATGGTGAGTGGCACAGTGCCATTTCAGAATATGACTCCAATTCAGGTTGCTGTTGCAGTAGCTGATAGGGATTCAAGGCCTATTATTCCTACACATTGCCCACATGATTTGAGAGATTTGATCAATCAATGTTGGGCCTTGAACCCAGATGAGAGACTCGAATTCTGTCAGATTGTTCGAGTGTTGGAGCAACTGATAGGAGACGTTTATCTCTAA	1176	0.4022	MVMMGTCVSQLEQNSKLEAMFMLRAFLNCFMFFTTSSSSFDSDDAENTVDLEIARSSPKPTENSSAVHQNHKKKHYSHIIMGKLSTTLLGKFKNRKESSWPLTKCFDHINRRDSGMGIAQNWNVEFSHLFIGYKFSHGAHSQIYHGIYKARHVAIKIFKVPECEEKKTIRSLLETQFSREVTHLPRLHHQNVVSFIAAYKDTNSFCILTEYQQKGSLRAHLNKFESKPIPLENVLAFALDIARGMEYIHAQGIIHRDLKPENILVDWDSHLKIADFGIACEASKCDSLWGTYRWMAPEMIKGKCYGRKVDVYSFGLILWEMVSGTVPFQNMTPIQVAVAVADRDSRPIIPTHCPHDLRDLINQCWALNPDERLEFCQIVRVLEQLIGDVYL	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst5g01818	391	PRINTS	Tyrosine kinase catalytic domain signature	309	331	IPR001245	GO:0004672\|GO:0006468
	Spst5g01818	391	PRINTS	Tyrosine kinase catalytic domain signature	247	265	IPR001245	GO:0004672\|GO:0006468
	Spst5g01818	391	PRINTS	Tyrosine kinase catalytic domain signature	353	375	IPR001245	GO:0004672\|GO:0006468
	Spst5g01818	391	PRINTS	Tyrosine kinase catalytic domain signature	209	222	IPR001245	GO:0004672\|GO:0006468
	Spst5g01818	391	PRINTS	Tyrosine kinase catalytic domain signature	290	300	IPR001245	GO:0004672\|GO:0006468
	Spst5g01818	391	Gene3D	Phosphorylase Kinase; domain 1	118	213	-	-
	Spst5g01818	391	SMART	serkin_6	129	386	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst5g01818	391	CDD	STKc_MAP3K-like	137	382	-	-
	Spst5g01818	391	SUPERFAMILY	Protein kinase-like (PK-like)	118	382	IPR011009	-
	Spst5g01818	391	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468
	Spst5g01818	391	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	69	384	-	-
	Spst5g01818	391	ProSiteProfiles	Protein kinase domain profile.	129	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst5g01818	391	Gene3D	Transferase(Phosphotransferase) domain 1	214	389	-	-
	Spst5g01818	391	Pfam	Protein tyrosine and serine/threonine kinase	134	382	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst5g01818	Spst-Chr5	53958151	53960023	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst5g01818	91	385	MAP Kinase Kinase Kinase	AT5G58950	53.020	2.45e-115	344

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Spst5g01818		PK_Tyr_Ser-Thr	3.2e-58	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst5g01818	-		-	var:108332641	490.73