Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01809 ATGTGGAGATTTAAGCCATTCAGCCACAAAGAGCATACTGGTCTTGAAGGACGCACTGTAGATGTTGGCAATCTTAAAATAAACATTGTTAAGGCCATTGCGGATGGAGGGTTCTCTTGTGTCTACCTAGCTCGTGATGTTGTACATATGTCAAAGCAATATGCTTTGAAACACATTATATGCAATGACGAAGAATCACTTGGATTGGTAAAGAAGGAGATATCTGTGATGAAGATGCTGTTAGGACATCCCAATGTTGTCACACTTCATGCACATGCTATCTTTGATATGGGTAGGACAAAGGAGGCATTCCTTGTGATGGAATTTTGTGAGAGGTCTCTGGCCAATGTGCTGGAGAGTCGTGGAGCTGGTCATTTTGATGAGAAACAGGTTCTTTTAATCTTCAGGGATGTATGTAACGCAGTTTTTGCTATGCACTGCCTGTCCCCTCCTATTGCTCACCGAGACTTGAAAGCGGAGAATCTTTTGTTGAGTTCAGATGGCTCATGGAAGTTATGTGATTTTGGTAGCACTTCCACCAATCACAAACGTTTTGAAAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACTCCAGCCTACAGGGCCCCTGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAGAAAGTGGACATATGGGCTCTTGGATGTCTTCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTTCAAGTCTTAAATGGAAACTACCGTATTCCTGATTTACCAAAATACGATTCATCTATCACGGACTTGATAAGAGACATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAATGAGCAACTGCCTGTTAATCTACAGAAATCATTACCCGATAGACCTCCTGACTCACCCTCACCAAACAATCATGAAGGTATGCCAATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCTCCTTCATCTGGAGAACACAAAACTACACCACAGCCATCCCTTGCTTCTAGGGGAGGGGGCGATGGGGGGCAGCTTGGTGCTTTCTGGTCTAGTCAGCATGCAAAGGATTCACTTGTCAGTGAGGACAAGAGCAAACCAATTTTTGATGAAGATAGAGGTCGTCCTGAAAATGAACAAATAGTGAAAAATGTTGGTACTAGCAGAGTGGTTAATGCGCAAACTCATACTGTGAAAAGCGGTACACATGGAAAATTACACAAGCCTGATACCGCACCCTCAAAGGATTTTGAAATAAATTTATTCCAAGATAAAGATCGAAAGGAGAATACAGCCAACTTTCAAAACCAGGCTTTTAACACTTTTGTTGCTGAATTCGACACCACTAAGCTCAACTCTGGACCTAGTAACAAACCCGAAAGGGAACAAGCATTAGAGGCTGAAGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACGGGGAAAAAGCTGAAATAACATCAAAGTTTGAAAAGCTTTCTGCTATCTGCCGATCTCAAAGGCAAGAATTGCAGGATCTCAAGCAAGCACTAGCAGCTCGGACTCCTTCACCAAGTAAAGAGGGTTTGAAAACCTCTCCTGCAGTTACATCATCTGCACCTGTGCAGGATAGAGCTGAATGGAAAACTCCTAGTTCAGAACCAAAGTCATGGCAAGCATTTGCTGGGGAACCCCAACAACAAAAGGCCCATTTGGCAGAAAATACTGGCAAATCTGTAAGGACAAATAATGGTCTGCAGAACAAGCAATCTGTTCCACTCGCTACTAATTTTGATTCCTGGGGTTTCGGAACAGATAGCTTCAGTGCTGTACCCGCTGGCAGCTCACAGATGCAAAGACCTAGCAGTGCTGGAGGTAAGTCTCAGGGTTTTGGTGAGGCAAAGGCCTTTGAGAGTAAGCCAACTACTCAACCAGCTGGTTGGGCTGGTTTTTAA 1989 0.4399 MWRFKPFSHKEHTGLEGRTVDVGNLKINIVKAIADGGFSCVYLARDVVHMSKQYALKHIICNDEESLGLVKKEISVMKMLLGHPNVVTLHAHAIFDMGRTKEAFLVMEFCERSLANVLESRGAGHFDEKQVLLIFRDVCNAVFAMHCLSPPIAHRDLKAENLLLSSDGSWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYDSSITDLIRDMLQARPDDRPDITQVWFRVNEQLPVNLQKSLPDRPPDSPSPNNHEGMPMPSNRSPPMPRRNPPPPPSSGEHKTTPQPSLASRGGGDGGQLGAFWSSQHAKDSLVSEDKSKPIFDEDRGRPENEQIVKNVGTSRVVNAQTHTVKSGTHGKLHKPDTAPSKDFEINLFQDKDRKENTANFQNQAFNTFVAEFDTTKLNSGPSNKPEREQALEAEVEKLKEQLKEANGEKAEITSKFEKLSAICRSQRQELQDLKQALAARTPSPSKEGLKTSPAVTSSAPVQDRAEWKTPSSEPKSWQAFAGEPQQQKAHLAENTGKSVRTNNGLQNKQSVPLATNFDSWGFGTDSFSAVPAGSSQMQRPSSAGGKSQGFGEAKAFESKPTTQPAGWAGF 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01809 662 Coils Coil 480 528 - -
Spst5g01809 662 MobiDBLite consensus disorder prediction 614 637 - -
Spst5g01809 662 MobiDBLite consensus disorder prediction 614 662 - -
Spst5g01809 662 PANTHER SERINE/THREONINE PROTEIN KINASE 1 646 - -
Spst5g01809 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Spst5g01809 662 Pfam Protein kinase domain 30 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g01809 662 MobiDBLite consensus disorder prediction 300 394 - -
Spst5g01809 662 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 305 - -
Spst5g01809 662 MobiDBLite consensus disorder prediction 325 345 - -
Spst5g01809 662 CDD STKc_GAK_like 26 298 - -
Spst5g01809 662 SUPERFAMILY Protein kinase-like (PK-like) 28 343 IPR011009 -
Spst5g01809 662 MobiDBLite consensus disorder prediction 529 602 - -
Spst5g01809 662 MobiDBLite consensus disorder prediction 375 394 - -
Spst5g01809 662 Gene3D Transferase(Phosphotransferase) domain 1 10 306 - -
Spst5g01809 662 ProSiteProfiles Protein kinase domain profile. 27 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g01809 662 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g01809 662 MobiDBLite consensus disorder prediction 537 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01809 Spst-Chr5 53847424 53850663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01809 26 292 Miscellaneous Gene Families AT2G34180 29.181 2.29e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Spst5g01809 Pkinase 9.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01809 K08853 - gmx:100780879 1082.78