Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01806 ATGGAAAACCACCAAAACCACAAGGCAGAGCCAGAACCTGACAGAGACAAGAACCACCACCATAACCAAGCGTGGGGCACTTGGGAGGAGCTGTTACTAGCGTGCGCCGTGAACCGCCATGGCTTCAAGGACTGGGACACCGTCGCTCTCGAGGTTCAGTCGCGCGCCACGCGCCTCCTCGCCTCGGCGCGCCACTGCGAGCAGAAATTTCACGATCTCAACCGCCGATTTGCTGACCAATGCAACGACGGCGTTACGCCGCCGCAACAGAACGGCGCTGCCGCCGGCGACAACTCCGATCACGTCCCATGGCTCGACGAATTGCGGAAACTCCGCGTTGCCGAGCTCCGCCGCGAGGTCCAGCGCCGGGACGTTTCTATTCTGTCGCTGCAGTTGGAGGTGAAGAGGCTGGAAGAGGAGAAAGCCAAAGAAAATGACGGTAAAGACGACGAGAAACCAGATCTGGCGGTTTTGGGTGAGGCCCGGCCGGAAAACGACAAAACCGGCGGAGAAGTTGAAGAGGCTGGACCGGCGAATTCCGAACCGGAGCGAACCGCGAACGCTGACAAGATGTTGCCAACAACGGGGGACGAATCAGACCGGGAGAATCAGTCGGTTAACGAGTCTAACTCGACCGGTTCGAGGTTCGAGAAAACCGGAGAAGGAGACTTAAAGTTGCGAGTCGAACCGGTTACGGTCCAGACCGGTTCGATAGAACCGGATCCGGTTGCGAGGAAGGGTAAGCCGGTTGGAGAGGAATCGAATAACGGAAGCTACGATGCGTTGGCGAAGGTGCCAACGTGTGAGTCGGTGCCTCCGAGTGAGGAGAGGAAGGTGGAGCAGGACGATGACTCGTCCGAGTTGCACGATTCGGTGGCTCACTCCGGCGAGGGAGGGACGAGGGAGAGCAGCGACGTGCAAAGCTCCGCCAGCTTGACGCGGAAGAGGAAGACGCGGCGGAGAAAAGAGGTTTCCGGCGGAGACGGCCGTGGTGGGGGAACCTCCACACCGCCGGAGAACGACGATGTGGCGATGGTTGAATCAGAACCGTTGGCTGGGATTTTGGAGTTGATCAAGGGGCACGAGCACAGCTCTTTGTTCGAGCGCCGTCTTGAAAGCCAGGAGTCGGACAGATACAAATACATTGTGAAACAGCCACTGGACATGGAAACCATACAATTGAGAATCCAAAAAGGTCACTATTCTTCATGCCCTAATGCATTCTACCGCGATCTCCTCCTCCTCTTCACCAACGCCATCGTGTTCTTTCCCCATGACTCCCCGGAGTCACAGGCGGCCCGGCAGCTGCACCGCCTTGTCACCACTGAGATGAAGATCCACGTCCTAGCACCACAACCCGACCCTCTGCCCCGGAAGAACGATTCACTCCCTCAAAACGCACCGTTAGCCAAACCAGATTCTTTCTTTTCCAAGAACAAAGCCTCTGGTCCTATATTGGTTTGCCGCAAACGCAGTTCTATGTCAGCTAAACCTTCCTCGGCCACCTTTGGCCAAAAGGGTGACCAACCCATCCTCAATGACAAGAAGGAAAGGTCATCGTCTGATGCAAAACCTCCCACGAAACCTCCTTCTGATACAGACGAAGAGGAGCCTCCCAAGGCTAAGGAAAAGCCTGTCACTGGAGTGAGAAGCCTGAGAAGGAGCAACAAGAACCTCAACAATAAAAAACTTTCTTCTAACTCCACGCCTAAGGCAGGGTCTTCCGGTAACAAACCATCGGAGACCCTTAAACAAGAGAAGGGCAAGGCAGAGGGAGGGCCAGACAAGAAGAGGAACGCGGCAGCAGATTTCTTGAAACGGATAAAGCGAAACACTGCAGTGGAAGCAGTGAAGGGTGGTAGCGGTGGAGGGGGAGGAAGTAGTAGCAGCAGCAAGGGTGGTGGAGGTGGTGTTGGTGTCAAAGAGCAGAAGAAAATGGTGAATAATGGAAAGGGGGATAAAGGGAAAGAAAGGGCATCAAGGAATAGCGTTGGAGGAGGGTCAGGGTCTGGGGATAAAAGGAGTAAGAACAGTGAGAACAACTCTCAGTCGAAGAGGAGTGTTGGTCGACCTCCAAAGAAGGCAGCTGAGACAAATGCAGGGAGTGCAAAGCGTGGGAGGGAAAATAGTGCTAGTGCTGGCAAGGATAAGAGACCCAAGAAACGTTCCAAGAAATGA 2178 0.5496 MENHQNHKAEPEPDRDKNHHHNQAWGTWEELLLACAVNRHGFKDWDTVALEVQSRATRLLASARHCEQKFHDLNRRFADQCNDGVTPPQQNGAAAGDNSDHVPWLDELRKLRVAELRREVQRRDVSILSLQLEVKRLEEEKAKENDGKDDEKPDLAVLGEARPENDKTGGEVEEAGPANSEPERTANADKMLPTTGDESDRENQSVNESNSTGSRFEKTGEGDLKLRVEPVTVQTGSIEPDPVARKGKPVGEESNNGSYDALAKVPTCESVPPSEERKVEQDDDSSELHDSVAHSGEGGTRESSDVQSSASLTRKRKTRRRKEVSGGDGRGGGTSTPPENDDVAMVESEPLAGILELIKGHEHSSLFERRLESQESDRYKYIVKQPLDMETIQLRIQKGHYSSCPNAFYRDLLLLFTNAIVFFPHDSPESQAARQLHRLVTTEMKIHVLAPQPDPLPRKNDSLPQNAPLAKPDSFFSKNKASGPILVCRKRSSMSAKPSSATFGQKGDQPILNDKKERSSSDAKPPTKPPSDTDEEEPPKAKEKPVTGVRSLRRSNKNLNNKKLSSNSTPKAGSSGNKPSETLKQEKGKAEGGPDKKRNAAADFLKRIKRNTAVEAVKGGSGGGGGSSSSSKGGGGGVGVKEQKKMVNNGKGDKGKERASRNSVGGGSGSGDKRSKNSENNSQSKRSVGRPPKKAAETNAGSAKRGRENSASAGKDKRPKKRSKK 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01806 725 Gene3D - 340 448 IPR036427 GO:0005515
Spst5g01806 725 MobiDBLite consensus disorder prediction 140 342 - -
Spst5g01806 725 ProSiteProfiles Bromodomain profile. 359 430 IPR001487 GO:0005515
Spst5g01806 725 MobiDBLite consensus disorder prediction 490 725 - -
Spst5g01806 725 MobiDBLite consensus disorder prediction 271 296 - -
Spst5g01806 725 Pfam Bromodomain 354 434 IPR001487 GO:0005515
Spst5g01806 725 SMART bromo_6 340 449 IPR001487 GO:0005515
Spst5g01806 725 MobiDBLite consensus disorder prediction 510 550 - -
Spst5g01806 725 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 14 725 - -
Spst5g01806 725 MobiDBLite consensus disorder prediction 582 613 - -
Spst5g01806 725 MobiDBLite consensus disorder prediction 1 21 - -
Spst5g01806 725 MobiDBLite consensus disorder prediction 297 311 - -
Spst5g01806 725 Pfam Myb-like DNA-binding domain 23 71 IPR001005 -
Spst5g01806 725 Coils Coil 127 147 - -
Spst5g01806 725 CDD Bromodomain 354 444 - -
Spst5g01806 725 MobiDBLite consensus disorder prediction 140 171 - -
Spst5g01806 725 MobiDBLite consensus disorder prediction 646 660 - -
Spst5g01806 725 SUPERFAMILY Bromodomain 347 446 IPR036427 GO:0005515
Spst5g01806 725 MobiDBLite consensus disorder prediction 493 507 - -
Spst5g01806 725 CDD SANT 24 73 IPR001005 -
Spst5g01806 725 MobiDBLite consensus disorder prediction 551 581 - -
Spst5g01806 725 MobiDBLite consensus disorder prediction 450 476 - -
Spst5g01806 725 SMART sant 21 76 IPR001005 -
Spst5g01806 725 MobiDBLite consensus disorder prediction 663 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01806 Spst-Chr5 53808737 53813071 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst5g01806 Bromodomain 5.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01806 - - gmx:100779988 1066.6