Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01800 ATGTCCTCATCAACACAACATGGATCGTTAAAATGTCATTTTCTCTCTCATTTTCCGGGAAAATTTTTCCTCCAAGAGCCACATGGGTTGATCCGTTTCCGAGCATATCGTTATGGTGGTCACTTCACTTCAGTCTTTGCAAAATTTGCAGACATTGTGGGCTCTCCCAAGAGGAGCAGGTGGGGGTGGTGGTCCAAACCACACCTTTCCCCACTTGAATTCCACGTTCCTCTCTCCTCATCTCTCTCTCTTCACCTGGCCTATGCAGAGAAGGAGATCATGGAACTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGATTCATGGAAAAGCCTCGAGAAGCCTCCAACCAACTGGGGTCAGGCTTCAACACCACGTTATCAATTGGTCCAGCCATCACTAGACCGAAGGATCAACAAGATGAACAAGAAGAATTTCAAGAAGAGACAAAGCCAAAGAACAACAGCAATAACATCAACACTCACGCAACAGAAGATCCTTTCAAACCCAACAACAACAACAACCCAGTTCTGCATCAACTTGATCTTCTCCCTCAACTCTCTCTCCCTTGGCACCCTCCTTCAGAAAACGGGAGTTTATCATCTGAGTTGGGAGGTTCTTCGAGGGGCTTGGATGTGAACGCGCAGCCGCTGGCGGCAGAGGACGAGGCGGAGGAAGGGGCGGCGCTGTCATCATCTCCGAACAGCGCAGGCTCATCGTTTCAAATGGATCTCTGCATATACAACAACAGAGGAGGGAATTTCTATAAAAGGGACTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAAGATGATAACAACGGTAGCGGCGGCAACGCCAGAAAGAAACTCCGACTCTCCAAGGAACAATCTGCGTTCCTTGAAGAGAGTTTCAAAGAGCATAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGACCTCGCCAAGTAGAAGTGTGGTTCCAAAACCGAAGGGCAAGGACCAAGTTGAAGCAAACGGAAGTGGATTGTGAGTACTTGAAGAGATGTTGTGAGACACTAACGGAAGAGAATAGGAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAGCGTGTGGCCACAAATTCCACATCCACTTCCTCCTCTCTCAGTGCTCCTAATGCCACCATCAATGCAAATTCAGGAACCATGGCCAGTGTCAAAACCAGTGCTAATAACAATGACTCACCCTCCAAAGCCATTGGATTCCCCTTTGGTAAACCCAGGTTTCATCCATTTGTTCACGCTAGCCAGCAACCCCATCAACACCAATCCCCAGCATCTTGA 1416 0.4739 MSSSTQHGSLKCHFLSHFPGKFFLQEPHGLIRFRAYRYGGHFTSVFAKFADIVGSPKRSRWGWWSKPHLSPLEFHVPLSSSLSLHLAYAEKEIMELGLSLGDSSRPLLGFMEKPREASNQLGSGFNTTLSIGPAITRPKDQQDEQEEFQEETKPKNNSNNINTHATEDPFKPNNNNNPVLHQLDLLPQLSLPWHPPSENGSLSSELGGSSRGLDVNAQPLAAEDEAEEGAALSSSPNSAGSSFQMDLCIYNNRGGNFYKRDYEGEAYDQRASSRASDEDDNNGSGGNARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSSSLSAPNATINANSGTMASVKTSANNNDSPSKAIGFPFGKPRFHPFVHASQQPHQHQSPAS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01800 471 MobiDBLite consensus disorder prediction 429 471 - -
Spst5g01800 471 SUPERFAMILY Homeodomain-like 276 346 IPR009057 -
Spst5g01800 471 ProSiteProfiles 'Homeobox' domain profile. 285 345 IPR001356 GO:0003677
Spst5g01800 471 MobiDBLite consensus disorder prediction 268 293 - -
Spst5g01800 471 CDD bZIP 338 377 - -
Spst5g01800 471 SMART halz 345 388 IPR003106 GO:0006355|GO:0043565
Spst5g01800 471 MobiDBLite consensus disorder prediction 194 211 - -
Spst5g01800 471 MobiDBLite consensus disorder prediction 221 240 - -
Spst5g01800 471 MobiDBLite consensus disorder prediction 154 183 - -
Spst5g01800 471 Gene3D - 293 343 - -
Spst5g01800 471 SMART HOX_1 287 349 IPR001356 GO:0003677
Spst5g01800 471 Pfam Homeobox associated leucine zipper 345 379 IPR003106 GO:0006355|GO:0043565
Spst5g01800 471 Coils Coil 358 381 - -
Spst5g01800 471 ProSitePatterns 'Homeobox' domain signature. 320 343 IPR017970 GO:0000981|GO:0006355
Spst5g01800 471 Pfam Homeodomain 289 343 IPR001356 GO:0003677
Spst5g01800 471 FunFam Homeobox-leucine zipper protein 18 272 350 - -
Spst5g01800 471 CDD homeodomain 289 346 IPR001356 GO:0003677
Spst5g01800 471 MobiDBLite consensus disorder prediction 118 214 - -
Spst5g01800 471 MobiDBLite consensus disorder prediction 139 153 - -
Spst5g01800 471 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 158 418 - -
Spst5g01800 471 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01800 Spst-Chr5 53750422 53753300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01800 211 401 Homeobox Transcription Factor Family AT3G60390 60.396 1.34e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst5g01800 Homeodomain 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01800 K09338 - gmx:100778742 543.888