Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01799 ATGGATGAAGATTTGAATCAGCAACATTTGGATGGAATAGAAGGACGTATGAGATGCCTAGAAGTGGTAGCTTTCAGCGCTAGGGAACGTCAGAGAGAACGACTAAGTCACGCTCCGATTCGGATAGTTAACTATGCAGGAGAAGTGATAACAGTAGCTCATCTTCAGGATGAAGAAAGGGTGTTTGATGAAAATGTTGGTGTCGATGTTAGAGGAGAGGAGATGGTGGGAGATGGGACAGCAGGTAAAAGAAAAGCTAGCTGTTTGGTTGCCAAAGCATTGGGGGTGAAAACCAATGAGGGGGAAGGTTTTGCTGCAAAGTTGTTTCACTGTAATGTCTGCTTGAATAGAGCAAAGGATCCTGTTTTAACTTGTTGTGGTCACTTGTTTTGTTGGGCTTGCTTTCTTAAGCTGCCATATGCTTATTCAAAGGCCAAGGAATGTCCAGTTTGTCAAGGAGAGGTCACAAATGAAAGCATTATCACAATCTATGGCAACTCAAATGTTCAGAACAGTGGCAAGGTGAAATTTGATGAACCTAGTTATAAAATTCCTTCTAGACCCCGTTCAAGGAGGGTTGAGAGTACCAGGCAGCAATTCAGCAATTGA 609 0.4286 MDEDLNQQHLDGIEGRMRCLEVVAFSARERQRERLSHAPIRIVNYAGEVITVAHLQDEERVFDENVGVDVRGEEMVGDGTAGKRKASCLVAKALGVKTNEGEGFAAKLFHCNVCLNRAKDPVLTCCGHLFCWACFLKLPYAYSKAKECPVCQGEVTNESIITIYGNSNVQNSGKVKFDEPSYKIPSRPRSRRVESTRQQFSN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01799 202 ProSiteProfiles Zinc finger RING-type profile. 111 152 IPR001841 -
Spst5g01799 202 SMART ring_2 111 151 IPR001841 -
Spst5g01799 202 MobiDBLite consensus disorder prediction 180 194 - -
Spst5g01799 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 198 IPR013083 -
Spst5g01799 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 84 198 IPR045103 GO:0005783|GO:0006511|GO:0061630
Spst5g01799 202 SUPERFAMILY RING/U-box 107 165 - -
Spst5g01799 202 MobiDBLite consensus disorder prediction 178 202 - -
Spst5g01799 202 Pfam zinc-RING finger domain 110 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01799 Spst-Chr5 53705606 53706214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01799 72 197 C3H Transcription Factor Family AT3G58030 42.063 8.77e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01799 - - gmx:100778919 254.218