Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01780 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGACATCGGGAAATGCGATAGAGAAACGAACCATTGAAGTCGGTGCGGGCCCTACTTTTTTTTTTCTCTCTCTAAATTCCCCACCCAACTCACTCCTCACACTCTCATTATTTGTGCTTCTCTCCTCATTTCCTCCGCCACCGCCACCACCACAACTTCCTCCGATGGAGACGGCGGCGGAGCCAGAACCGAAGACCTACTGGTGCCATGAATGTGACATGAGCGTGTCCCTCACGCTCCCTCCCTCCCCTCTCCTTTGCCCCCACTGCCACACCCACTTCCTCGAACTCATGGACTCTCCCTTCTCACTAAACGACGCCGAATCACCGCTACTTGATGTCGTTTTCCAGGACGCGCTCTTACTTCTCTCCCCCAAGCCCCTCCCCTCCAAATCCCGTCCTCTCCCCTCCGTCCACGTCACCGCCGCGCTCCTCTCCGCTCTCGACCCCAACGGCGTCGTTCTCTGCGCCGTGTGCAAAGACCAAATTGCCCTCGATGCTGAGGCCAAGCAGTTACCCTGCAAACACCTCTACCACGCCGAGTGCATCACGCCGTGGCTTGAGCTCCACGCATCGTGCCCGTTGTGCAGGCTCCGCCTGGAGGAAGAGGCGGAGGAGGAGGAAGAGGAAGGTGACGGTGTGGTGACGGAGATCCGGAGGGAGCTGATCGCCAGGCTGACGGAGTTGACGGAGGAGGATTTCTACGGGCTGAGGACCACGCTCAGCCACATTGCCTCGCGTCACGCGCTCATCGAAGAGAACGAGAACCGCGCCCAAATCGGGGAACCTCGAGGTGGCGAACCGCCTTTGCTATAA 855 0.5883 MYLAGTRLNHSAKATSGNAIEKRTIEVGAGPTFFFLSLNSPPNSLLTLSLFVLLSSFPPPPPPPQLPPMETAAEPEPKTYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPFSLNDAESPLLDVVFQDALLLLSPKPLPSKSRPLPSVHVTAALLSALDPNGVVLCAVCKDQIALDAEAKQLPCKHLYHAECITPWLELHASCPLCRLRLEEEAEEEEEEGDGVVTEIRRELIARLTELTEEDFYGLRTTLSHIASRHALIEENENRAQIGEPRGGEPPLL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01780 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 228 IPR013083 -
Spst5g01780 284 SUPERFAMILY RING/U-box 166 214 - -
Spst5g01780 284 SMART ring_2 169 209 IPR001841 -
Spst5g01780 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 211 - -
Spst5g01780 284 Pfam zinc-ribbon 79 111 IPR039525 GO:0061630
Spst5g01780 284 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Spst5g01780 284 Pfam Ring finger domain 169 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01780 Spst-Chr5 53567817 53568782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01780 73 213 C3H Transcription Factor Family AT3G60080 33.659 2.48e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01780 K11982 - gmx:100775530 301.597