Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01774 ATGAGTACCAGAGTAGAAGAGGAAGAATCCACCATCTCCAGTGATGAAACAATCTGTGTTGAAGTTGTTTTTATGAGGGGTTCAGAAGTGTACGATGATTATTTGGAGTTTCCGTCACCAGTTACTCCTGACTTCTTTGCTACTGAACATATCCAATGGCTATTAGAAGACGTTCTTGAAGATCTGGGTGTACCTCAAAGTTTTTTCGATGGTCGTGATTGCGACATGATTGAAAACCTTTGTAGAATGTTACGTGATTCAATATGTGGTCACACTGTCACAAATTATTTCTACATGGTCATTGAAGTATCAAGTGGTCGATGCATTTACAACATAATGGATCTCTCGTGCTTTTCGAATGATGACCAGGTTGCATCAACTGTGTTTATTCAAATGCAATCTTTACCTGCGGGAGCAACAAAACTGAGAAGATTTAAGTTTGAAGATGAAGATGAAGATGATGATGATAAAGATGAAGAGGAAGAAGATAATTGTTTCATATGTTTAGAAGATTTTAAGTATGGAGATAATGCAGCAAGATTGCCTTGCACCCATGTTTGTCATTATGATTGTATTTTGAAGTGGTTTGTTCATAGTGCTACTTGTCCTTTCTGTCGATTTTCATGTATTGAAACCTCTTTTAGTTACGAAGATTAA 657 0.3668 MSTRVEEEESTISSDETICVEVVFMRGSEVYDDYLEFPSPVTPDFFATEHIQWLLEDVLEDLGVPQSFFDGRDCDMIENLCRMLRDSICGHTVTNYFYMVIEVSSGRCIYNIMDLSCFSNDDQVASTVFIQMQSLPAGATKLRRFKFEDEDEDDDDKDEEEEDNCFICLEDFKYGDNAARLPCTHVCHYDCILKWFVHSATCPFCRFSCIETSFSYED 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01774 218 SMART ring_2 165 205 IPR001841 -
Spst5g01774 218 PANTHER TARGET OF ERK KINASE MPK-1 151 208 - -
Spst5g01774 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 210 IPR013083 -
Spst5g01774 218 SUPERFAMILY RING/U-box 164 211 - -
Spst5g01774 218 ProSiteProfiles Zinc finger RING-type profile. 165 206 IPR001841 -
Spst5g01774 218 Pfam Ring finger domain 163 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01774 Spst-Chr5 53520751 53521407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01774 155 213 C3H Transcription Factor Family AT3G60080 44.068 1.01e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01774 - - aprc:113862471 137.117