Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01772 ATGAACTTTTTGGGGAACAATGATGTTGAGTCAAAAGAGGGTGCTGGTGTTTATTGCAGCAAAAGCAACGAGAAGAACAAACCAAGAGAAATTGGAATGGAAGCCAAAGGTTTAGGAGAAGTTAGAAGGCTTCACATCATTTACTTCCTCAGTCAGATAGGTGGTCGTGCTGATCATCCTCATCTAATTCGAGTACTTCATCTTACTCGTAATGGGGTTTATCTAAGAGATGTCAAGAGATGGCTTGGGGAATTGAGAGGAAAAGACTTACCTGAGGCTTTTTCTTGGAGGTACAAGAGTGGATATGTGTGGCAAGACTTGTTGGATGACGACCTCATAACCCCCATCTCTGACAATGAATACATCCTCAAAGGATCACAAATCCACACTACCCCATTTGCAACAACTCCTTCACTTGAAGAAAAGAAAACTACCGTTTGTGATATCCATGCTGAGAAGATGTGTTCTCAAGTACAACTTTTAGAGGACAAAGGAAAACAGCAGCAGTCGCCAAAGTCTCTAGCAGAAGAAGAATCTCAAATTCAACCAGACCAGAATTCGAAATCAGATACTCCAACAAAAGGGTCATCAGAAATCAGCCAGGACTCATTGGTCTTCGGCTCAGACAGGTCATCTATGACAGATGATGACTCTTCTAAGGTTGAAGAAGAGAAGCATCTAGTGATCAAAACAGGAAAAGAGAGTTTCAGTAAAATGCGCCAGGAGAAGCCAGAGACATGCTCATTACCTTCCTTGTATCACAGTTTATTGAGTAAGAAGGGCACTCACAAAGATGACCAAAATAAAACTCACTCACCTGATTCATCCTTATCCACCATATCATCATCATCATCTCAATCATCCTTTACAAAGATCAGAAGCAATTCTACCAAAGTTTCTAATGTGTTTCGAAATTGGATCACTTGTGGCACTGTGGACACAAATGATGCAGCACTGACCCTGATGAACCCCGCTCGAAAAATTTTATCCAAGGAAACTGCCAACAAACCTGAAACAAAAGCTGAGATTTGTAAGGGAGACAGATTGGGAGGATCAGCGAGGTCTTTTAGGACTTCCTGGGGTCATCATGACCAGAAACAGCAATATGGGGCAAGAAAAAGCTTTGATGGAGAGGAAACAAACAGGGGCAGGAAAATGTTAGGCGAGTTGCTAAACCAAACTGCTTCCAGACCATATGGAGGACCTATTTGCTCGCAATGTGGGAAGTCGTTTAAGCCTGAGAAAATATTCAAACACATGAAGTCTTGTAAAGGAATGAAAGCCTTCGGAAAGTCAACCACAACTGTTGAGGAGGGACAGCATCAGAGATCATCAACTTCATCCCATACACCTTACCTTTTGACCAACTAA 1371 0.4201 MNFLGNNDVESKEGAGVYCSKSNEKNKPREIGMEAKGLGEVRRLHIIYFLSQIGGRADHPHLIRVLHLTRNGVYLRDVKRWLGELRGKDLPEAFSWRYKSGYVWQDLLDDDLITPISDNEYILKGSQIHTTPFATTPSLEEKKTTVCDIHAEKMCSQVQLLEDKGKQQQSPKSLAEEESQIQPDQNSKSDTPTKGSSEISQDSLVFGSDRSSMTDDDSSKVEEEKHLVIKTGKESFSKMRQEKPETCSLPSLYHSLLSKKGTHKDDQNKTHSPDSSLSTISSSSSQSSFTKIRSNSTKVSNVFRNWITCGTVDTNDAALTLMNPARKILSKETANKPETKAEICKGDRLGGSARSFRTSWGHHDQKQQYGARKSFDGEETNRGRKMLGELLNQTASRPYGGPICSQCGKSFKPEKIFKHMKSCKGMKAFGKSTTTVEEGQHQRSSTSSHTPYLLTN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01772 456 Pfam Protein SOSEKI, plant 45 334 IPR010369 -
Spst5g01772 456 MobiDBLite consensus disorder prediction 232 251 - -
Spst5g01772 456 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 27 445 IPR010369 -
Spst5g01772 456 MobiDBLite consensus disorder prediction 162 225 - -
Spst5g01772 456 MobiDBLite consensus disorder prediction 431 456 - -
Spst5g01772 456 MobiDBLite consensus disorder prediction 433 456 - -
Spst5g01772 456 MobiDBLite consensus disorder prediction 260 294 - -
Spst5g01772 456 MobiDBLite consensus disorder prediction 272 294 - -
Spst5g01772 456 MobiDBLite consensus disorder prediction 162 212 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g01772 DUF966 3.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01772 - - vun:114179809 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01772 5 53492762 53496102 Spst5g01772 5 53492762 53496102 ECH