Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01766 ATGGCCGCTGCCGACTCCTCCTCCGCCGCGGCTCCGTCGCGTCAGCTTTCTCAGAAGGAGACGGACATTCAGATGATGCTCGCCGCCGACGTTCACCTTGGCACTAAAAACTGCGACTTTCAAATGGAACGCTACGTCTTCAAGCGCCGCACGGACGGTATATACATAATTAACCTTGGCAAAACATGGGACAAGCTCTATCTTGCTGCTAGGATTATTGTTGCTATAGAGAACCCTCAGGATATCATTGTTCAGTCTGCCAGGCCTTATGGTCAGAGGGCAGTTCTTAAGTTTGCTCAGTACACTGGGGCTCATGCAATTGCAGGAAGACACACTCCTGGAACATTCACTAATCAGATGCAGACATCCTACAATGAGCCTCGTCTTTTAATTCTAACTGATCCAAGAACAGATCATCAGCCTATTAAAGAAGGTGCTCTTGGAAATATTCCAACTATTGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGACATTGGGATTCCAGCCAATAACAAGGGAAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTAGCTAGAATGGTGCTTCAGATGCGTGGTACTATTCGTCCGGGTCACAAGTGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTTTGCCATTGACTATGCTGCTGGCATTAGCAGCTTCCCTGCCGAAGGCCAATGGCCTGCTGCACACGAGCAACCCTGGACTGAAGAGGCTCCACAACCAATACCAGCAGTTCCTACTAACTGGACCCCTGAAACAGCTGTTGCAGGGGATTGGGGTGAGTCTGTTCCTGCTCCTGCTCCGGTTCCTACTCCGGTTCCTCAAGATGCTGTGCCTCCAGCTCAAACTTTTCCTGCTACTGGCTGGGATTAG 942 0.4904 MAAADSSSAAAPSRQLSQKETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWDKLYLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDFAIDYAAGISSFPAEGQWPAAHEQPWTEEAPQPIPAVPTNWTPETAVAGDWGESVPAPAPVPTPVPQDAVPPAQTFPATGWD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01766 313 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Spst5g01766 313 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Spst5g01766 313 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Spst5g01766 313 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Spst5g01766 313 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Spst5g01766 313 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Spst5g01766 313 Hamap 40S ribosomal protein SA [rps-0]. 10 252 IPR027498 GO:0003735|GO:0006412|GO:0015935
Spst5g01766 313 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Spst5g01766 313 FunFam 40S ribosomal protein SA 22 228 - -
Spst5g01766 313 MobiDBLite consensus disorder prediction 288 302 - -
Spst5g01766 313 Pfam Ribosomal protein S2 26 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Spst5g01766 313 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
Spst5g01766 313 Gene3D - 22 227 - -
Spst5g01766 313 NCBIfam 30S ribosomal protein S2 19 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Spst5g01766 313 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
Spst5g01766 313 PANTHER 40S RIBOSOMAL PROTEIN SA 13 292 IPR005707 GO:0003735|GO:0006412|GO:0015935
Spst5g01766 313 MobiDBLite consensus disorder prediction 248 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01766 Spst-Chr5 53425758 53428147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01766 6 288 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.632 2.39e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01766 K02998 - gmx:100786575 542.347