Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01756 ATGATGCCAGGCAATGGACAGTTAACAGTTCCTCCTGGTTTCAGGTTCCACCCTACTGATGAGGAGCTTCTCTACTATTACTTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATAAGAGAAGTGGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGATAAATGTAGGATTGGGTCAGGGCCTCAGAATGAGTGGTATTTCTTCAGTCACAAGGACAAGAAATACCCGACAGGAACAAGAACAAATCGAGCAACTACAGCTGGTTTTTGGAAAGCAACTGGAAGGGACAAGGCCATATACCACACTAATTCTAAGAGGATTGGCATGAGGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGACGTTCAGGAAGATGGGTGGGTGGTATGCAGGGTTTTCAAAAAGAAAAACCAAAATCGAGGTTTCCAGCAAGAAATTGAAGAAGAAGATCACTTAACCCACATGAGAACAGTTGGTCCTTGCCAGGTGCTAGAGCCAAAACATCACATGCAAGGAGGACTATATGACTACAACTTTGATGGGACAATGCACCTTCCACAGTTGTTCAGTCCAGAATCAGCTGTTGCACCAACCACTGCTTCCTTGGCCTCATCCATGAATGCCATGGACATACTTGAGTGCTCTCAAAACTTGTTGAGGCTGACAGGTACTGGATGTGGACTTAATCTTATGCAACAACAAGGAGAGAGGTTCAGTGGTGACTGGTCATTCTTGGACAAGCTACTAGCATCCCACCATGGCATGGATCATCAGCATCATCCACAAAGCAAATGTAACCCTCCCACTCACCAAGCTGCAACTCCTGTGGGCACTTCAGCTCAGAAATTCCCATTCCACTACCTTGGCTGTGACACCCATGATATCATGAAATTTTCCAAGTAG 975 0.4513 MMPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDADVQEDGWVVCRVFKKKNQNRGFQQEIEEEDHLTHMRTVGPCQVLEPKHHMQGGLYDYNFDGTMHLPQLFSPESAVAPTTASLASSMNAMDILECSQNLLRLTGTGCGLNLMQQQGERFSGDWSFLDKLLASHHGMDHQHHPQSKCNPPTHQAATPVGTSAQKFPFHYLGCDTHDIMKFSK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01756 324 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Spst5g01756 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 230 - -
Spst5g01756 324 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Spst5g01756 324 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Spst5g01756 324 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Spst5g01756 324 MobiDBLite consensus disorder prediction 277 298 - -
Spst5g01756 324 FunFam NAC domain-containing protein 19 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01756 Spst-Chr5 53299945 53301342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01756 2 324 NAC Transcription Factor Family AT1G79580 53.906 1.04e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g01756 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01756 - - vun:114178728 652.129