Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01745 ATGCCAACTTTGATTTCATCTAGGTTTCTTTTGTTTGTTGGGGAGTCTCTCCATTTGAAAAGGGCTTTGACCAATTCTAGGTCTGTTTTATTTCACACTAGTGTCAAGTGTATGAGCCAGGGGGAACCTAATCATGGTTCCCTCACCCTCTCTAGCATAGGTTTTCAAACTGAAACTGAACCCGGGAACAGAAGCACTTCTAATAAGGTTAAGCCATTGGGTTCACCCTCTGAGAATATAAAGAGCAAAGGAAAGCCCTTTGACATTAATGAGAAGAAGAAGAAAGCTGTTAGAGTTGTAGAAAAACAGCAAATAGAGTCTGCCCCTTTTGCTGCAAAGTCATTTTCAGAACTTGGCCTCCCACATGTGTTGATTGAAAGGCTAGAGAAGGAGGGTTTTACTGTTCCGACTGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTAAACAAGCATGATGTCATAATTCAGTCTTACACAGGTTCAGGTAAGACGCTAGTCTATCTGCTTCCTATTCTCTCGGTTGTTGGGCCACTGAGGGGGCAAGTTCCCCAAGGCAATGATGATGGTGGTGAGAATGGGAAGAAATTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTGGGAATGAATAACAAGAGAGTGGTTCAGCAGCTTGTTGGGGGTGCCAACCGAATCAGGCAGGAAGAAGCTTTGAAGAAAAATAAACCTGCAATTGTTATTGGCACACCTGGTAGGATAGCAGAGCTAAGTTCATCTGGGAAACTTCGCACTCATGGATGTCGATATTTGGTATTAGATGAAGTTGACGAACTCTTGTCATTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAAGTGCAGACCCAAACTCAAGTTCTGGAAAGACTGAGCGTCAGTTAATCATGGTGTCTGCAACTGTGCCCTTTTCTGTTGTAAGGGCAGCAAGGAGCTGGGGTTGTGACCCACTTCTTGTTCAAGCCAAGAAAGTTGTCCCGCTTGAAACTCAATCTTCCCCTGAGCCTGTCAGTTTATCTCGGCCCTCGTCCAGCTTAAGTCCTAACTCAGCCATGCCATCTCAGGCAGCAGTAGAGAGTCTACCTCCTGCGCTGAAACACTATTACTGTGTAACAAGGTTGCAGCACAAAGTTGATATGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCACACTAAACAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGAGGGATGAAAGCCATGGAATTACATGGGGATCTAGGGAAGCTTGCGAGGTCAACAACCCTGAAGAAATTCAAGAACGGTGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCAAGGGGTTTGGATGTAGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCAACAGATTCAATTCATTATGCCCACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGAATGGTACAGTGCTAACGATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAATTGCAGAAGCAGCTGGGAATACCAATTGCTCCATGTGATTTTTCAGAGGGGAAACTACTTGTCACTGAAGAAAAGAAAGCAGTAAGCACTTCTAGAAGTTGA 1689 0.4494 MPTLISSRFLLFVGESLHLKRALTNSRSVLFHTSVKCMSQGEPNHGSLTLSSIGFQTETEPGNRSTSNKVKPLGSPSENIKSKGKPFDINEKKKKAVRVVEKQQIESAPFAAKSFSELGLPHVLIERLEKEGFTVPTEVQSAAVPTILNKHDVIIQSYTGSGKTLVYLLPILSVVGPLRGQVPQGNDDGGENGKKLGIEAVIVAPSRELGMQIVREFEKVLGMNNKRVVQQLVGGANRIRQEEALKKNKPAIVIGTPGRIAELSSSGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSSADPNSSSGKTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVVPLETQSSPEPVSLSRPSSSLSPNSAMPSQAAVESLPPALKHYYCVTRLQHKVDMLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAMELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGIPIAPCDFSEGKLLVTEEKKAVSTSRS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01745 562 SMART helicmild6 429 510 IPR001650 -
Spst5g01745 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 530 IPR027417 -
Spst5g01745 562 SMART ultradead3 132 365 IPR014001 -
Spst5g01745 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 345 IPR014001 -
Spst5g01745 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 549 IPR001650 -
Spst5g01745 562 CDD DEADc 124 346 - -
Spst5g01745 562 MobiDBLite consensus disorder prediction 355 378 - -
Spst5g01745 562 Pfam DEAD/DEAH box helicase 137 331 IPR011545 GO:0003676|GO:0005524
Spst5g01745 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Spst5g01745 562 MobiDBLite consensus disorder prediction 56 85 - -
Spst5g01745 562 Gene3D - 389 557 IPR027417 -
Spst5g01745 562 Gene3D - 78 347 IPR027417 -
Spst5g01745 562 Pfam Helicase conserved C-terminal domain 405 510 IPR001650 -
Spst5g01745 562 MobiDBLite consensus disorder prediction 56 75 - -
Spst5g01745 562 CDD SF2_C_DEAD 390 519 - -
Spst5g01745 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 45 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01745 Spst-Chr5 53152985 53154673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01745 114 538 Eukaryotic Initiation Factors Gene Family AT3G19760 23.765 4.06e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01745 - - gmx:100812968 959.133