Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01742 ATGGCTGCTCAATTGCAAAATTCTACAGATGAAATGAGGAAGAAGCTTCTTGGTAATTCTTCAACGGCTGAACTCAATAATTCCAATACGGTTCCTTCGAAGGGTGCAAGTTCCCCATCTGATGCAAGATCGTGTGTATCATCCATAGGAGATGCTTCTGGTAGTGTTAAGGAAGTTGATGTGGATCATGAATACTTGACAACAGATCAGGGTGTTCCTTATCCTGCTGGCGGCTATTATGGTTACTACTATCCAGGTTATGGTGGTTTCTTTGGAGAATCAGACAACCAAGGGTACTACGTTGGTGCGGATGCCATGGATCTTCAGTACCCTGTCATGCAAGCAGATAATGGATCTTATGTCTATCTCATGCCAGGATTTCAGACTGGCTACCCTTCATACTTTCCTGTAAGTACAGCTGGTGTTGAAGGACAGTATAATGTCTACCACCCTGGCTCCATCTTTCAACAGCCAATTGGATCACCTGGTTATTTTCCAGCTTCTCTATCATATGGAGAGTTACCACAATCAACATACTCATGGGATTCTTCTCTAATCACCCAAGATGGATTACAAGGACATGGTTATAGTGAACTGGCTGTTAAACCAAATGGTAGATCTAATTTGTCTTCCCAGAGTCATTCCGGTGGTATTGTGTCAAAGTCTTCACCCTCATCTAACTTGGCAGAAGTGAAGGGTTCAACACCATTATTAGAGGTCTCATCAACTCATGTTAAGAGAAACCAGCCAAAACAAACAAACAAAGCACCTGTTTCAGTCCTCCATTCTCCTGTCGCCAAGTTTCCCACATACAATCAAGGAAAGAGTGGATTCCTCTATCCAAACAACTTGCTTAATGTGAAAGCAAATACAAAGGGCTGGGTTAATACTGATAAGTTGAAAAACAGAAACAAGGTCAATGATTCACTTAATGAGCAGAATCAAGGTCCTAGAACAGCTAATGCAAAAGGTGCATTAGTGTCTGGAGGTAATTCTGCGAGAAACGTGGCCCTAGGTGGGAGTGGAAATGTTACCAGCAAAATCAAGACAGATCAATACAATCTTCCTGATTTTCCAACCAAATATGACCATGCACTTTTCTTTGTCATCAAATCATACAGTGAAGATGATATCCACAAGAGCATCAAGTACAACGTGTGGGCGAGTACTCCTAATGGGAACAAGAGGCTGGATGGTGCATTTCAGGATGCACAGAAGAGAATGGAAGAGAAACGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCGGTCAATGCTAGTGGTCAATTTTGTGGAGTAGCTGAGATGACTGGTCGAGTTGATTTCAACAAAAGTATGGATTTCTGGCAACAAGATAAATGGAATGGATATTTCCCTGTCAAATGGCATATTATAAAGGATGTTCCAAATCCTCAATTACGGCACATAATACTTGAGAATAATGATCACAAGCCTGTCACAAATAGTAGAGACACACAAGAGGTGAGTTATCCCCAAGGTGTTGAAATTCTCAACATTTTCAAGAACTATGTGGCAAGAACCTCCATATTGGATGACTTTGAGTTTTACGAAAGCCGCCAGAAGGTCTTGCAGGAGAAGAAAACAAGGCAATCTATGCCCCATACCAGTTTACAGCATCTAGATGAATTAACCACAACACTAGGGTCAGTAGACCTATCATCATCATCTGTGAAGAACATGGAGGATCCTAAGGTGGTTGAGAAAGTGAATGACTGA 1734 0.4164 MAAQLQNSTDEMRKKLLGNSSTAELNNSNTVPSKGASSPSDARSCVSSIGDASGSVKEVDVDHEYLTTDQGVPYPAGGYYGYYYPGYGGFFGESDNQGYYVGADAMDLQYPVMQADNGSYVYLMPGFQTGYPSYFPVSTAGVEGQYNVYHPGSIFQQPIGSPGYFPASLSYGELPQSTYSWDSSLITQDGLQGHGYSELAVKPNGRSNLSSQSHSGGIVSKSSPSSNLAEVKGSTPLLEVSSTHVKRNQPKQTNKAPVSVLHSPVAKFPTYNQGKSGFLYPNNLLNVKANTKGWVNTDKLKNRNKVNDSLNEQNQGPRTANAKGALVSGGNSARNVALGGSGNVTSKIKTDQYNLPDFPTKYDHALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDGAFQDAQKRMEEKRCKCPVFLFFSVNASGQFCGVAEMTGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDHKPVTNSRDTQEVSYPQGVEILNIFKNYVARTSILDDFEFYESRQKVLQEKKTRQSMPHTSLQHLDELTTTLGSVDLSSSSVKNMEDPKVVEKVND 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01742 577 MobiDBLite consensus disorder prediction 196 232 - -
Spst5g01742 577 ProSiteProfiles YTH domain profile. 365 506 IPR007275 GO:0003723
Spst5g01742 577 MobiDBLite consensus disorder prediction 307 327 - -
Spst5g01742 577 CDD YTH 367 506 IPR007275 GO:0003723
Spst5g01742 577 Gene3D ph1033 like domains 342 521 - -
Spst5g01742 577 MobiDBLite consensus disorder prediction 1 49 - -
Spst5g01742 577 MobiDBLite consensus disorder prediction 304 327 - -
Spst5g01742 577 MobiDBLite consensus disorder prediction 203 232 - -
Spst5g01742 577 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 96 541 IPR045168 -
Spst5g01742 577 Pfam YT521-B-like domain 367 507 IPR007275 GO:0003723
Spst5g01742 577 FunFam YTH domain family 1, isoform CRA_a 344 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01742 Spst-Chr5 53102526 53106429 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01742 K20102 - gmx:100791190 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01742 5 53102526 53106429 Spst5g01742 5 53102526 53106429 ECH