Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01734 ATGGGCAACCTCTTTGGCAAAAGTAAAAAGCATGGCACTCAAAGTTCAAGCCGTGATAAAGGAAGAGGTGGAAGAATCTACACCAACATGACTACAAGAGGTTTACCAACCAATTTTCCAACACAGATATCTTCCTCGTTGCCACCACCACCAATATTATATCCAACTCTCGAACCACCCTCACCACCGCCACCACCACCACCTGTGCGATCACGATCCATTTCCAAGAAACCAAGTTTTGGGAGAGTTGACTCTAAACAAAGCTCTTCAGTCATGGACAATAAGCAATCTGCAGCCAAGAAGTATGCTCTTATTCGTGATAACTTCTCTACCCTTGAACAGGTGACTACAGCCTTGAGGAAAGAAGGACTAGAATCGTCGAATCTCATCCTTGGAATTGATTTTACAAAGAGTAATGAATGGACTGGCAGAATCTCTTTCAATAATAGAAGCCTGCATGCTATTGGAACTACACCTAATCCGTATGAGAAGGCCATCACTATTATAGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATCCCATGCTTTGGCTTTGGAGACGCTACTACCTATGATCAAGAAGTGTTTAGCTTTCACAGTGATCATTCATCTTGCCATGGCTTTGAGGAAGTATTGGCTTGCTACCAGAAAATAGTTCCAAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCGGTGATTGAAGCTGCCATAGACATAGTTGAGAAAAACCGTGGCCAATTCCATGTGTTGGTTATAATTGCTGATGGCCAGGTTACAAGAAGTGTCAACACTGGAGATGGAGAACTCAGTCCTCAGGAAGAAAAGACAATTAAAGCAATAGTTGATGCAAGTGCATATCCGCTTGCAATAGTTCTGGTTGGAGTTGGTGACGGGCCTTGGGAAGACATGAGAAAGTTTGATGACAGGATACCCGCACGTGATTATGACAATTTTCAGTTTGTTAATTTCACGGAAATAATGTCGAGAAACACAAGCCCCTCCGAGAAAGAAGCGGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCCTTCCAATACAAAGCAACCATGGAATTTGGAATACTCGGTCGAGTAACAGGAAGAGCGAAGAGAATGGTTCCAAAACCTCCTCCTCTTCCTTATTCAAGGCCTGCACCACCACCAGCGCGTCTTCCCAGCAATGCTGCAGCATCCTCCATTGATGATCAAAACCAATCAGCCTGCCCTGTTTGTTTGACAAATCCGAGAGACTTGGCCTTTGGATGTGGACACATGACTTGCAGAGATTGTGGATACAAGTTAACTAACTGTCCCATGTGCCGAGATAGGATCAATACTCGTCTCAGGGTATACAGTGGATGA 1368 0.443 MGNLFGKSKKHGTQSSSRDKGRGGRIYTNMTTRGLPTNFPTQISSSLPPPPILYPTLEPPSPPPPPPPVRSRSISKKPSFGRVDSKQSSSVMDNKQSAAKKYALIRDNFSTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNNRSLHAIGTTPNPYEKAITIIGKTLAPFDDDNLIPCFGFGDATTYDQEVFSFHSDHSSCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKNRGQFHVLVIIADGQVTRSVNTGDGELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDDRIPARDYDNFQFVNFTEIMSRNTSPSEKEAAFALAALMEIPFQYKATMEFGILGRVTGRAKRMVPKPPPLPYSRPAPPPARLPSNAAASSIDDQNQSACPVCLTNPRDLAFGCGHMTCRDCGYKLTNCPMCRDRINTRLRVYSG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01734 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 454 IPR013083 -
Spst5g01734 455 MobiDBLite consensus disorder prediction 78 94 - -
Spst5g01734 455 Pfam Copine 151 363 IPR010734 -
Spst5g01734 455 SMART VWA_4 126 328 IPR002035 -
Spst5g01734 455 MobiDBLite consensus disorder prediction 43 72 - -
Spst5g01734 455 MobiDBLite consensus disorder prediction 375 393 - -
Spst5g01734 455 MobiDBLite consensus disorder prediction 375 400 - -
Spst5g01734 455 SUPERFAMILY vWA-like 127 310 IPR036465 -
Spst5g01734 455 SUPERFAMILY RING/U-box 402 449 - -
Spst5g01734 455 ProSiteProfiles Zinc finger RING-type profile. 410 443 IPR001841 -
Spst5g01734 455 PANTHER COPINE FAMILY PROTEIN 1 83 430 - -
Spst5g01734 455 MobiDBLite consensus disorder prediction 1 94 - -
Spst5g01734 455 Pfam Zinc finger, C3HC4 type (RING finger) 407 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01734 Spst-Chr5 52991786 52997848 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01734 K16280 - gmx:100790153 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01734 5 52991786 52997848 Spst5g01734 5 52991786 52997848 ECH
Spst5g01734 5 52991786 52997848 Spst11g00429 11 24992424 25005242 PCT