Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01727 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAAAGGAAAATAACAGGTCGCGCGATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTGCCAGATAAATCATTCCTTCCAAGCAAGGACAGGGAGTGGTACTTTTACAGTCCTAGAGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGATACTGGAAAGCTACAGGGAAAGATAGACCAGTGCACTCTCAAAAGAAGCCAGTTGGCATGAAGAAGACATTGGTATATTATAGAGGTCGAGCACCACATGGCATTAGAACAAACTGGGTTATGCATGAATACCGCTTGATCGAATCAGTGCCTGGTGTTGCTCTTTCATCTTTGAAGGATTCCTATTCGTTGTGTCGCATTTTCCAGAAGACGATTCAAATTCCTGCCAAACCTAATAAAGAAGAAGAACAAGCCGAGGATGGAAAGAAGGAGTCAATGTGGATCTCAGAAGAACAAATGTTAGGGGAAGACTCGAGTGGCACTGAGATTTCTAGAGAAATGGAAATTGTGGAGGACAAAATTCTCAACCATGAATACCCTAAATTTCCTTGTGACGCTTCTTCCTCAGATCTCACTCAGGGAACATGCACACCCACAGACACTGGTATAGCAGAAGATTTCCAACCTCAATTTGCTTGTGATGAAGCAAACAGTGCAACTAATTCATATACAATGGGAATAGGATACCCCACAAATCTATTTCAGGATGTGGAAATACCTTCCTATGCTGGCATGCATTATCAACTCCCATATACACCTTTGGTGCTGGAAGATTTCCCTCAAATAACTTTACCTGAGACAAAGTCAACGAAGCCAGAAATAACTGATGACTGCATGTTATACGACAGATACAGGGACTGTATGAATGGAACACTAGAAGAGATCATCGCTTTGTGTTGCACTCAAGATAATTCCGTCCCTTTTCCCATGCTAGAATGA 1041 0.4284 MAPMSLPPGFRFHPTDEELVAYYLERKITGRAIELDIIAEVDLYKCEPWDLPDKSFLPSKDREWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESVPGVALSSLKDSYSLCRIFQKTIQIPAKPNKEEEQAEDGKKESMWISEEQMLGEDSSGTEISREMEIVEDKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPQFACDEANSATNSYTMGIGYPTNLFQDVEIPSYAGMHYQLPYTPLVLEDFPQITLPETKSTKPEITDDCMLYDRYRDCMNGTLEEIIALCCTQDNSVPFPMLE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01727 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 210 - -
Spst5g01727 346 FunFam Nac domain-containing protein 86 15 160 - -
Spst5g01727 346 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Spst5g01727 346 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Spst5g01727 346 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Spst5g01727 346 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01727 Spst-Chr5 52790072 52793874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01727 1 335 NAC Transcription Factor Family AT1G54330 50.893 1.74e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g01727 NAM 7.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01727 - - gmx:100808325 685.256