Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01726 ATGAGTCAGAATTTTGATACCATAGGGAGAGTGTTTGAACAGAACTTAAAAATGGGCCACCGTTGCTGCAGCAAACAGAAGATAAAAAGAGGACTATGGTCTCCTGAAGAAGATGAGAGACTTGTCAGATATATCAACACTCATGGACATAAAAGTTGGAGTTCTGTGCCAAAATATGCAGGCAAGCATTTCCTTCTTCATGTATGGTTGCAGAGATGTGGCAAGAGTTGCAGGTTGAGATGGATTAATTATCTGAGGCCGGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATTATAATTGACATACATAGAATTCTTGGAAACAGATGGGCACAAATTGCTAAGCACCTACCAGGAAGAACAGACAACGAGGTTAAGAATTTCTGGAACTCATGCATAAAAAAAAAGCTCATTTCTCAAGGGTTAGATCCACAAACCCACAATCTCCTATCTTCTCATAAAAGAAGTTTCGCATCTACCATCTCCAATATGCATCAAAATTCCAATTCCATTTGCATCATTAGTTCACACGTACCAAATGCTCCAATGGAAACTACTTTTCAAACCTTTTCTTCATTACCTAAACCTCCACCAAGCGTTGTTCAAACTTCCTCCAGCATTGTTACTTCTGAATATCAAACATCTCCTATTATTTCAAATAAATTCTCATCAGATTTGCCCTACGAACTATTAATCGACCACGCCTCCAACATTTGTTCACCCTCATTTATGAACCCTCCAGCAGTTGAATTGCCGAACAATGTGAACAGTGTCAATTGGATTTCAAGAGTTAATGTTGATGATTTCAGCGCTCAAACTCTTGAAGAGGGAACACAAGTGGAGGTGCAGCAAGAGATGAACACGACTTGTGAGGATAAGGGAACTGATGTGATAGAAGCTAGCAAGGGCAATCTTGAAAGCAGTGCTTCTTTCGAGAGTTCTAACTTTGATTTTGGGTTGTTGGATTGTGTACTTTCCTCCGAATTTATCTCTCATGATCTCAGTTGTATGGATGAACTTGCATGGAACTTTTAG 1044 0.3985 MSQNFDTIGRVFEQNLKMGHRCCSKQKIKRGLWSPEEDERLVRYINTHGHKSWSSVPKYAGKHFLLHVWLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHKRSFASTISNMHQNSNSICIISSHVPNAPMETTFQTFSSLPKPPPSVVQTSSSIVTSEYQTSPIISNKFSSDLPYELLIDHASNICSPSFMNPPAVELPNNVNSVNWISRVNVDDFSAQTLEEGTQVEVQQEMNTTCEDKGTDVIEASKGNLESSASFESSNFDFGLLDCVLSSEFISHDLSCMDELAWNF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01726 347 Gene3D - 92 163 - -
Spst5g01726 347 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Spst5g01726 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 85 IPR017930 -
Spst5g01726 347 CDD SANT 93 133 IPR001005 -
Spst5g01726 347 Gene3D - 30 90 - -
Spst5g01726 347 PANTHER MYB DOMAIN PROTEIN 55 18 313 - -
Spst5g01726 347 SMART sant 29 87 IPR001005 -
Spst5g01726 347 SMART sant 90 138 IPR001005 -
Spst5g01726 347 Pfam Myb-like DNA-binding domain 30 85 IPR001005 -
Spst5g01726 347 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Spst5g01726 347 FunFam Transcription factor MYB86 92 167 - -
Spst5g01726 347 CDD SANT 33 85 IPR001005 -
Spst5g01726 347 ProSiteProfiles Myb-like domain profile. 25 85 IPR001005 -
Spst5g01726 347 FunFam MYB transcription factor 27 91 - -
Spst5g01726 347 SUPERFAMILY Homeodomain-like 27 132 IPR009057 -
Spst5g01726 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01726 Spst-Chr5 52740379 52742066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01726 17 241 MYB Transcription Factor Family AT3G12720 55.187 2.05e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g01726 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01726 K09422 - gmx:100791209 509.22