Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01688 ATGGTTTCTACACAAATTGGTTCAAGGTGGTCAAAGATTGCATCACGTTTGCCTGGAAGGACAGACAATGAGATCAAGAATGTGTGGAACACCCACTTAAAGAAAAGGTTGGCTCCTAAAAAAAAGTCAGAATTAAGTGCAGATGAATCCAAGCCAGAATCAACAATAACTTCCTCCTCTTCCTCTTCATCTGAGTCATTTTTCTCAAATGATAAGCCAAATTCACCAAAAACCACAACACCTGATAATAGTGAATTTGATGACCAAGCTGAGAAATTATCAATGGAAGATAAAATTGAGCAGGATTCAGAAAAACAAGTGTCCAAGGAACTAATTGGAATCGCTGAGGATCCAAAAGAGTCGTCAGTTTCGTTATCTTCTTATGAGTCAAATATTGTAAACTCAAGCCAGAATATGGCAGACAAACCAGAACAACAATTGGCTTCTCCATTATCAGTTTCATTATATTCTGTTGAGTCAAATATTGTAAATTCAGGCCACATAGTTGCACACAAACCAGAACAACAATTGGCTTCTCCATTATCCTACCTGGGACCTTATGATGTTGGCAGTGTATTAGAAGAGGTGGATAAACCAAACCACCTGATTGAAATTCCATGGGAACCAGATTATGATTTTTGGAAGTTGTTAGATGATGATGATAGCCTTGGATCTTTTCAATCAAATGAAGTCCAATTAGGTGAGTTCCCAGCCATCCAAAACATCATTCTTGAAGAGGAGAGTGTTGAAGATGTTGAAGCCAGGAAGTGGTCCCATGATTTTGAGAATGAGTTTGGAGAAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATTTCCTACCAAAGAACTATGCAGTTGAACCAGAAATGAACCACACTCAGGCATTTGATTTCGATGACATGACAAGACCAGAATCCGAATTAGACTTTGATTATATCCACTTATGGCCCTCTTGGCCTCAAAATACGAGTCTCTAG 978 0.3865 MVSTQIGSRWSKIASRLPGRTDNEIKNVWNTHLKKRLAPKKKSELSADESKPESTITSSSSSSSESFFSNDKPNSPKTTTPDNSEFDDQAEKLSMEDKIEQDSEKQVSKELIGIAEDPKESSVSLSSYESNIVNSSQNMADKPEQQLASPLSVSLYSVESNIVNSGHIVAHKPEQQLASPLSYLGPYDVGSVLEEVDKPNHLIEIPWEPDYDFWKLLDDDDSLGSFQSNEVQLGEFPAIQNIILEEESVEDVEARKWSHDFENEFGEVGEIKESNKDHFLPKNYAVEPEMNHTQAFDFDDMTRPESELDFDYIHLWPSWPQNTSL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01688 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 37 IPR017930 -
Spst5g01688 325 Pfam Myb-like DNA-binding domain 6 33 IPR001005 -
Spst5g01688 325 ProSiteProfiles Myb-like domain profile. 1 33 IPR001005 -
Spst5g01688 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 130 - -
Spst5g01688 325 MobiDBLite consensus disorder prediction 50 83 - -
Spst5g01688 325 CDD SANT 9 33 IPR001005 -
Spst5g01688 325 Gene3D - 2 61 - -
Spst5g01688 325 SUPERFAMILY Homeodomain-like 5 38 IPR009057 -
Spst5g01688 325 MobiDBLite consensus disorder prediction 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01688 Spst-Chr5 51976054 51977031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01688 6 85 MYB Transcription Factor Family AT3G23250 51.685 4.07e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst5g01688 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01688 K09422 - gmx:100101836 455.677