Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01686 ATGGTGATAAAGTGGAGATGTCCAAAGCAAACCCTCCCTCCCAGTTGTGATACTGGTTTCCAAAAGAAACTCCTCTATCTAGAATCCATTGGTATTGACTCTTTCTCTTTTATTGAAAACCATCCAACACTGATCACCACCTCTCTTACTGATATAAAATCCACCGTGGAATACATTACCGCGATGGATTTCACTGCAATCGAGTTTCGGCGAATGGTTGGAATGTGCCCTGAGATTCTGACCACTAATGTGTCAGACATCATACCTGTCTTCACCTTCCTTCATCGGGAGGTTCATGTGCCTTGTTCAGACATTAAGCGGGTCATAAATCGCCGGCCGAGGTTGCTTGTCTGCAGTGTTAGTAAGCGACTTCGTCCCACCCTATACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACTGACTTGCTATCATGTAGTGTTGAAGAAAAGTTCATGCCCAGGATTGATTACTTTGAGAATGGTGGGTTTTCTCGGCGTGATGCAACTTCAATGTTTCGCAGATTTCCTCAGCTGTTTTGTTATAGTATTAAAAATAATTTGGAGCCTAAATACAGTTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGCTGATAGAATTTCCACAGTATTTCTCATTTAGCCTAGAGAATAGAATTAAGCCTAGGCATAAAAAGTGTGTAGAAATGAGGGTGTGTTTTCCTCTCCCTGACTTGTTAAAAACAAAGGAAGTGAAATTTCATAGTAGATTGGATGTGTTTGTAAATTCTTCAACACCCTTGAAAACATCCCCTCTGTGGTGTGCTGGTGGCAACTTTTATGAATGA 837 0.4146 MVIKWRCPKQTLPPSCDTGFQKKLLYLESIGIDSFSFIENHPTLITTSLTDIKSTVEYITAMDFTAIEFRRMVGMCPEILTTNVSDIIPVFTFLHREVHVPCSDIKRVINRRPRLLVCSVSKRLRPTLYFLQSIGIEEVNKHTDLLSCSVEEKFMPRIDYFENGGFSRRDATSMFRRFPQLFCYSIKNNLEPKYSYFVVEMGRDLKELIEFPQYFSFSLENRIKPRHKKCVEMRVCFPLPDLLKTKEVKFHSRLDVFVNSSTPLKTSPLWCAGGNFYE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01686 278 Gene3D Transcription termination factor 3, mitochondrial 79 259 IPR038538 -
Spst5g01686 278 SMART mt_12 35 65 IPR003690 GO:0003690|GO:0006355
Spst5g01686 278 SMART mt_12 172 204 IPR003690 GO:0003690|GO:0006355
Spst5g01686 278 SMART mt_12 70 101 IPR003690 GO:0003690|GO:0006355
Spst5g01686 278 SMART mt_12 106 137 IPR003690 GO:0003690|GO:0006355
Spst5g01686 278 SMART mt_12 205 236 IPR003690 GO:0003690|GO:0006355
Spst5g01686 278 SMART mt_12 138 167 IPR003690 GO:0003690|GO:0006355
Spst5g01686 278 PANTHER CGI-12 PROTEIN-RELATED 36 253 IPR003690 GO:0003690|GO:0006355
Spst5g01686 278 FunFam Transcription termination factor MTEF1, chloroplastic 94 258 - -
Spst5g01686 278 Pfam mTERF 104 250 IPR003690 GO:0003690|GO:0006355
Spst5g01686 278 Pfam mTERF 6 105 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst5g01686 mTERF 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01686 K15031 - gmx:100804440 504.982