Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01677 ATGGATAAATCAGATCTCATTCAACAACAACAGCAGCAGCAGCAGCATGTGATGGGAGTTGCTGCAGGTGCTAGTCAAATGCCCTATTCTTCTCACTACCAGACTGCTCCCATAGTGGCTGCTGGCACACCTGCTGTAGCTGTTGCTTCTCCAACACAGGCTCCTGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATATCAGCAAGCACAGCATTTCCACCATCAACAGCAGCAGCACCAACAACAGCAGCTTCAAATGTTCTGGTCAAATCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCACAGTCTCCCTCTTGCACGAATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTGGAGTTAACATTACGGTCTTGGATTCACACTGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCAAGAAACGATGTTTTCGATTTCTTGGTTGATATTATTCCAAGAGATGAGCTGAAAGAGGAAGGACTTGGAATAACTAAGGCTACTATTCCGTTAGTGGGTTCTCCAGCGGATATGCCCTATTACTATGTCCCTCCGCAGCATCCTGCGGGACCTCCTGGGATGATGATGGGAAAGCCAGTTGATCAAGCAGCGGTATATTCTACACAGCAGCCTCGACCTCCCATGGCTTTCATGCCATGGCCCCATACACAACCTCAGCAACAACAGCCACCCCAACAACAGCAAACAGATTCGTGA 807 0.4523 MDKSDLIQQQQQQQQHVMGVAAGASQMPYSSHYQTAPIVAAGTPAVAVASPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPAGPPGMMMGKPVDQAAVYSTQQPRPPMAFMPWPHTQPQQQQPPQQQQTDS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01677 268 Gene3D Histone, subunit A 67 184 IPR009072 GO:0046982
Spst5g01677 268 MobiDBLite consensus disorder prediction 237 268 - -
Spst5g01677 268 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 60 254 - -
Spst5g01677 268 Pfam Core histone H2A/H2B/H3/H4 70 169 IPR007125 GO:0003677
Spst5g01677 268 SUPERFAMILY Histone-fold 63 178 IPR009072 GO:0046982
Spst5g01677 268 FunFam Nuclear transcription factor Y subunit gamma 71 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01677 Spst-Chr5 51813290 51814096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01677 85 232 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.879 5.39e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst5g01677 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01677 K08066 - gmx:100796987 400.593