Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01670 ATGATGAGTACAACGTTTACGCGTTTACAGTTCCAGAAGAGAGAAGATGAGAAATCTTGTCCACTTGCTCTGACAACTTGCTTCAACCCACTCTTTTGCACTATCACAATAGCCTATATATTTCAAGCCACAAAAGAAGAAACACCAACCAAAGACACCACACAACACTCAGAAATTTCCTTTTCCATGCCCCTCTCTCCCTCTTCCATGGCCTCAATCCCACAGTTCTATCCAAACTACACGTTCACTACTCACGATCTTTCCGAGTTCCCTACCCCACTCATGAGTAGCAACGCCTCAGTTATGGACAACACCATGTGGGGTGGTCAAGATAGCTTGATTCCTGTGCTTGATATGAATAATGGCGCGCTTGATCATATTGTGTCACTGGATTGTGATACCATGGCTTGTGCCAGTTGGATGCCATCCTTTTCTGAGCAGCTTGGGGGCCTTTCAGACTTGGCCATTTCAGACTGCAAAATGGGCTTCTATGGAGGCTTTCAGAACTTCAACAGCAGATACCAGCCAAATATTGGGGACTTTGGAGATGAATGTTGTGGGTTTGTGGAGGATGTTAAACCTCCTGCTTATCCTAATGCTGCAAGAGAAAACTGGGGACTTCAAGGTAATCAAATGCAAGCAGTTGAAGAGCCTAACATAAAGGTAGGAAGGTACTCAGAAGAAGAGAGGAAAGAGAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTCAGAGTTAGGGGAAGGTTTGCAAGAAACAATGAGCTTTGTGAAGAAGACATGGCATCAAAAAAGCACGAGAATCATCACCACAAAGAAGACTTCTACGGTGGTGATTCAATCCAGTTCCAGTTAAAGAATGATGAGGAGGATTGGCTGCAAGAGGCTATGGCAAGTCTTGTTTATCTATCTCATTCTTCACCTGAAGATATGTAA 993 0.432 MMSTTFTRLQFQKREDEKSCPLALTTCFNPLFCTITIAYIFQATKEETPTKDTTQHSEISFSMPLSPSSMASIPQFYPNYTFTTHDLSEFPTPLMSSNASVMDNTMWGGQDSLIPVLDMNNGALDHIVSLDCDTMACASWMPSFSEQLGGLSDLAISDCKMGFYGGFQNFNSRYQPNIGDFGDECCGFVEDVKPPAYPNAARENWGLQGNQMQAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDMASKKHENHHHKEDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01670 330 ProSiteProfiles CCT domain profile. 230 272 IPR010402 GO:0005515
Spst5g01670 330 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 53 284 IPR045281 GO:0009909
Spst5g01670 330 Pfam CCT motif 230 272 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01670 Spst-Chr5 51719085 51721016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01670 226 280 C2C2-CO-like Transcription Factor Family AT5G57660 47.273 3.81e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst5g01670 CCT 1.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01670 - - vra:106761508 503.827