Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01669 ATGAAAGAGAGTGGTAGAAAACAAGGTACCATGTCGCCATGTGCGGCTTGCAAGCTTCTCCGAAGGAGGTGCACCAGGGATTGTGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTGCACAAGGTTTTCGGGGCTAGCAATGTGAACAAGATGCTACAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTGAGTTCAATGGTGTACGAAGCGAATGCAAGGGTGAGGGACCCTGTTTATGGATGTGTGGGAGCCATATCCTCTCTGCAACAACAAGTTGATGTGCTCCAAACCCAACTGGCACTGGCACAAGCAGAGGTTGTGCACATGAGAATGCGCCAATTCTCACCACCACCAAATCAAGACCACCATCAAGCCTGCCTAGTGGCTCCTGAACCCTCCAATTCATCATCAGAAAACTTGTTCCAATCATCAAGCAGGCTCTTGTCTTCGCAAACCAAGTCCCTTTTAGGCATGGACATGGGGCAATCCTTGTGGTTATACTAG 525 0.4857 MKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQFSPPPNQDHHQACLVAPEPSNSSSENLFQSSSRLLSSQTKSLLGMDMGQSLWLY 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01669 174 Coils Coil 92 112 - -
Spst5g01669 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 141 - -
Spst5g01669 174 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Spst5g01669 174 MobiDBLite consensus disorder prediction 121 149 - -
Spst5g01669 174 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01669 Spst-Chr5 51701923 51705624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01669 1 127 AS2 family AT1G31320 83.465 7.83e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst5g01669 LOB 3.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01669 - - gmx:100803188 267.314