Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01667 ATGGGTGTGAACGAAAATTTCAACAGGGATGATCATCAGGAGTGTGTGGATGATGATGAAATTCCACTTCCTGGATTTCGATTCCACCCCACAGATGAAGAGCTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATCAGCATCGAGCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAAACCAGTGCCACTGGAGGAGAGAAGGAGGGGTACTTCTTCTGCAGAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAACAGAGTCACTGGCTCTGGGTTCTGGAAAGCAACTGGCATAGACAAGCCAGTGTACTCACATGGAGGAGAAGGCAATGACTGCATTGGACTCAAAAAAACTCTAGTGTACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCATCTAACACTGACACCAACACAAACCTTCCCAACTCCAGGAATTATGTAGATGTTCCCCAAGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAGAGAAATGTGTCACAGAAGAAGCACATGCCAGACTTTAAACACGTATCAGCTAAGCGCCATGCCTTTCATGAAAAGAGCTCCAGAATGAGCAATGTGGAGTTTGACAGTGCTAATCAAGAATCATACATAAACTTCGGTGGCCACTATCACATTGAGCAGAAACCCGCCATCAACTACACAAACACTGACCAAAGGAATCAGTTTCATGTGATGAGTCAGTTGTGTTCTCCAGTGGCACAACAGCAACCTCAACTAACTGCACCATCTTCTAACCTTTGGACTAACCCACCTGGGAACGATTTCTTCACATTCGATAACTGGGATGAACTTGGATCCGTAGTGAAGTTTGCTGTTGATTCGCCTAGCATGTAG 927 0.4444 MGVNENFNRDDHQECVDDDEIPLPGFRFHPTDEELVSFYLRRKLDKKPISIELIKQIDIYKYDPWDLPKTSATGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTNLPNSRNYVDVPQEAEIWTLCRIFKRNVSQKKHMPDFKHVSAKRHAFHEKSSRMSNVEFDSANQESYINFGGHYHIEQKPAINYTNTDQRNQFHVMSQLCSPVAQQQPQLTAPSSNLWTNPPGNDFFTFDNWDELGSVVKFAVDSPSM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01667 308 ProSiteProfiles NAC domain profile. 22 186 IPR003441 GO:0003677|GO:0006355
Spst5g01667 308 Gene3D NAC domain 31 190 IPR036093 GO:0003677|GO:0006355
Spst5g01667 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 240 - -
Spst5g01667 308 FunFam NAC domain-containing protein 35 31 189 - -
Spst5g01667 308 SUPERFAMILY NAC domain 23 186 IPR036093 GO:0003677|GO:0006355
Spst5g01667 308 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01667 Spst-Chr5 51622682 51624522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01667 19 195 NAC Transcription Factor Family AT5G39820 58.421 4.61e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g01667 NAM 7.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01667 - - gmx:100790471 566.614