Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01661 ATGGCTAGGAAGAAGGATGACCAGAGAGCAATGGTCGGTTCAGAGGAGGTGAAGTTCACAATTGATCAACTTCGACGGATTATGGACCGCAAACACAACATTAGGAACATGTCTGTTATTGCTCACGTTGATCATGGAAAATCCACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATCATAGCACAAGAGGTTGCAGGAGATGTGAGGATGACGGATACTCGTCAAGATGAAGCTGAAAGAGGTATCACTATCAAGTCCACTGGCATCTCTCTCTACTATGAGATGCTAGAGGGTGATTTGAAGAATTTCAAGGGAGAGCGTGAAGGGAATGAGTTCCTTATAAATCTCATTGACTCACCTGGGCATGTGGACTTCTCATCTGAGGTCACGGCTGCGCTTCGCATCACTGATGGAGCACTTGTGGTGGTGGATTGTGTAGAGGGTGTATGCGTACAGACAGAAACAGTGCTGAGACAAGCTCTTGGAGAAAGGGTTAAGCCTATTTTAGCAGTTAACAAGATGGATAGGTGCTTCCTCGAGCTCAACCTTGATCCAGAGGAGGCATACCTTACATTTCAAAGGGTTGTTGAGAGTGCAAATGTGATCATGGCAACCTATGAAGATGCTCTACTTGGTGATATTCAGGTATACCCTGAGAAGGGGACGGTTGCTTTCTCTGCTGGTTTGCATGGATGGGGTTTTACCCTTACCAACTTCGCCAAGATGTATGCTTCCAAGTTTGGAATTGATGAGGCAAAGATGATGAGTAGGCTTTGGGGTGCGAATTTCTTTGATTCTGCCACCAAAAAGTGGACCAACAAACACAGCGGGACTGCTACTTGTAAGCGTGGCTTTGTTATGTTATGTTATGAACCGATCAAACAGATTATTGAGCTTTGCATGAGCGACCAGAGGGATGAGCTGTGGTCCAAGTTGCAAAAGATTGGGGTAAACATGAAGTCAGAGGAAAAGGAATTGACAGGAAAGGCTTTGATGAAGCGTGTTATGCAGAGTTGGCTCCCGGCAAGTAGTGCCCTTCTGGAGATGATGATATATCACCTTCCCTCTCCTGCCAGTGCTCAGCAGTATCGCGTTCAGAATTTGTACGAGGGCCCCCTGGATGATCCTTATGCTTCTGCTATCAGAAATTGTGACCCCGAAGGACCTCTAATGCTTTATGTCTCAAAGATGATTCCTGCATCTGATAGGGGTAGGTTTTATGCTTTTGGCCGAGTCTTCTCTGGTAGGGTTTCAACCGGTTTGAAAGTCAGAATCATGGGACCAAACTTTATCCCGGGAGAGAAAAAAGACTTGTACGTTAAAAGTGTTCAGCGAACTGTAATTTGGATGGGAAAGAAACAGGAAACTGTTGAGGATGTGCCTTGTGGCAATACGGTAGCTATGGTGGGCTTGGATCAATTCATAACCAAAAATGCTACATTGACCAATGAGAAAGAAGTTGATGCACACCCCATTCGAGCTATGAAGTTTTCTGTGTCACCCGTGGTTAGTGTTGCTGTTACAAGTAGGGTTCCATCAGATCTTCCTAAGCTACAAGAAGGTCTAAAACGTTTAGCAAAGTCAGACCCTATGGTGGTCTGCACAATGTCAGAGACAGGAGAGCATATAATATCTGCTGCTGGTGAGCTTCATCTTGAAATCTGCTTGAAGGACTTGCAGGTCGATTTTATGAATGGAGCAGAGGTTTCAATATCTGATCCTATCGTCTCTTTCCGCGAGACTGTGTTTGAAAGGTCTTGCCGTACAGTGATGAGCAAGTCACCTAACAAACACAACCGCCTATACGTGGAAGCAAGGCCTACGGAGGATGGACTAGCAGAGGCTATTGATGATGAAAAGATTGGACCAGGGGTTGACCCAAGAAATAGGTCTAGAATATTGTCAGAAGAGTTTGGTTGGGACAAGGATCTGACCAAGAAAATATGGTGTTTTGGCCCTGAGGGTAAAGGACCCAACATGGTCGTTGATACTTGCAAGGGCGTACAGTACCTCAATGAAATCAAAGACTCGATTGTTGCGGGGTTTGAGTTAGCATCAAAAGAAGGTCCACTGGCTGATGAGAACATGCGAGGGGTCTGCTTCGAGATTTGTGATGTGATTCTCCATGCTGATACTATTCACAGAGGAGGCGGCCAGATCATTCCAACTGCTAGAAGGGTCTTCTATGCAGCCACACTGACAGCAAGACCGAGACTTCTGGAGCCTGTGTATCTGGTGGAAATACAGGCACCTGAACAGGTTCTTGGCGGTATATACAATGTTCTTAACCAGAAAAGAGGACAAGTGTTTGAGGAAATCCATAGGCCTGGCACCCCACTTTACACTGTCAAGGCATATTTGCCTGTTATTGAGTCATTTAAATTCAATGAATCACTACGGGCTCAAACCGGGGGGCAGGCTTTCCCCCAGTTAGTATTTGACCATTGGGATATGGTGTCATCTGATCCACTAGAACCCGGCACTCCTGCTGCTGCTCGTGTTGCAGAGATAAGAAGGAAGAAAGGTTTGAAGGAACAAATTACACCTCTCTGCGAGTTCGAGGACAAGCTTTGA 2577 0.4587 MARKKDDQRAMVGSEEVKFTIDQLRRIMDRKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMLEGDLKNFKGEREGNEFLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERVKPILAVNKMDRCFLELNLDPEEAYLTFQRVVESANVIMATYEDALLGDIQVYPEKGTVAFSAGLHGWGFTLTNFAKMYASKFGIDEAKMMSRLWGANFFDSATKKWTNKHSGTATCKRGFVMLCYEPIKQIIELCMSDQRDELWSKLQKIGVNMKSEEKELTGKALMKRVMQSWLPASSALLEMMIYHLPSPASAQQYRVQNLYEGPLDDPYASAIRNCDPEGPLMLYVSKMIPASDRGRFYAFGRVFSGRVSTGLKVRIMGPNFIPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVSVAVTSRVPSDLPKLQEGLKRLAKSDPMVVCTMSETGEHIISAAGELHLEICLKDLQVDFMNGAEVSISDPIVSFRETVFERSCRTVMSKSPNKHNRLYVEARPTEDGLAEAIDDEKIGPGVDPRNRSRILSEEFGWDKDLTKKIWCFGPEGKGPNMVVDTCKGVQYLNEIKDSIVAGFELASKEGPLADENMRGVCFEICDVILHADTIHRGGGQIIPTARRVFYAATLTARPRLLEPVYLVEIQAPEQVLGGIYNVLNQKRGQVFEEIHRPGTPLYTVKAYLPVIESFKFNESLRAQTGGQAFPQLVFDHWDMVSSDPLEPGTPAAARVAEIRRKKGLKEQITPLCEFEDKL 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01661 858 SUPERFAMILY Translation proteins 357 491 IPR009000 -
Spst5g01661 858 Pfam Elongation Factor G, domain III 502 564 IPR041095 -
Spst5g01661 858 SUPERFAMILY EF-G C-terminal domain-like 499 575 IPR035647 -
Spst5g01661 858 SUPERFAMILY Ribosomal protein S5 domain 2-like 577 741 IPR020568 -
Spst5g01661 858 Pfam Elongation factor Tu domain 2 408 482 IPR004161 GO:0005525
Spst5g01661 858 Gene3D - 585 737 IPR014721 -
Spst5g01661 858 Pfam Elongation factor G, domain IV 629 736 IPR005517 GO:0005525
Spst5g01661 858 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 32 359 IPR000795 GO:0003924|GO:0005525
Spst5g01661 858 FunFam Translation elongation factor 2 501 578 - -
Spst5g01661 858 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 22 857 - -
Spst5g01661 858 CDD EF2 35 245 - -
Spst5g01661 858 CDD EF2_snRNP_III 513 574 - -
Spst5g01661 858 Gene3D Elongation Factor G (Translational Gtpase), domain 3 500 578 - -
Spst5g01661 858 Gene3D - 738 858 - -
Spst5g01661 858 CDD aeEF2_snRNP_like_IV 574 746 - -
Spst5g01661 858 FunFam Translation elongation factor 2 584 737 - -
Spst5g01661 858 Gene3D - 18 252 IPR027417 -
Spst5g01661 858 Pfam Elongation factor Tu GTP binding domain 32 357 IPR000795 GO:0003924|GO:0005525
Spst5g01661 858 CDD EF2_II 390 485 - -
Spst5g01661 858 Gene3D Translation factors 358 499 - -
Spst5g01661 858 Pfam Elongation factor G C-terminus 739 825 IPR000640 -
Spst5g01661 858 FunFam Translation elongation factor 2 18 252 - -
Spst5g01661 858 PRINTS GTP-binding elongation factor signature 36 49 IPR000795 GO:0003924|GO:0005525
Spst5g01661 858 PRINTS GTP-binding elongation factor signature 132 143 IPR000795 GO:0003924|GO:0005525
Spst5g01661 858 PRINTS GTP-binding elongation factor signature 80 88 IPR000795 GO:0003924|GO:0005525
Spst5g01661 858 PRINTS GTP-binding elongation factor signature 116 126 IPR000795 GO:0003924|GO:0005525
Spst5g01661 858 PRINTS GTP-binding elongation factor signature 168 177 IPR000795 GO:0003924|GO:0005525
Spst5g01661 858 SMART EFG_C_a 739 828 IPR000640 -
Spst5g01661 858 FunFam Translation elongation factor 2 358 499 - -
Spst5g01661 858 NCBIfam small GTP-binding protein domain 35 187 IPR005225 GO:0005525
Spst5g01661 858 FunFam Translation elongation factor 2 738 858 - -
Spst5g01661 858 SUPERFAMILY EF-G C-terminal domain-like 742 838 IPR035647 -
Spst5g01661 858 CDD eEF2_snRNP_like_C 742 820 - -
Spst5g01661 858 SMART EFG_IV_2 625 737 IPR005517 GO:0005525
Spst5g01661 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 356 IPR027417 -
Spst5g01661 858 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 73 88 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01661 Spst-Chr5 51514238 51519046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01661 17 858 Eukaryotic Initiation Factors Gene Family AT1G56070 81.591 0.0 1472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01661 K03234 - tcc:18594569 1450.26