Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01657 ATGGCCGTTGAGGCGCGCCATTTCAATCTCTTCCCTTCTCCTCTCATAACCAACCGCCAAGTGGTGAATTCTGTGGATGCGAATATCAACATGTATAACGCACAGCAGATTGGTTATTCTTCGTTTCTGCCGTTATCTGGCGCCGTCACGGAACCGGTGCTTCCTTCGTCGGTGTACAATTCGCTCGGAAACGCTGGCAAATCTGAGAGCGGTTTGACCTATAACAACAGCGTTGTTGTTCCACCGATGTCTAGAAAGCGTTCCAGAGAGAATTACAGCTACAATGACTCCTTCTCTTTTCTCGGCCAAGACGTTTCTCTTCAGATCCAACAGCAGCAACTCGACATCGAGCATTTAATCATGCAACGCATGGAGAAGGTTAGAATAGAGATTGATGAGAAGCGGAAGAGGCAAGCGAGGAGGATAATCGAGGCGATTGAGATCGGCGTGATGAAGAAACTGAAGGCGAAGGAGGAGGAGATAGAGAAAATCGGGAAGCTAAATTGGGCGCTGGAAGAGAGAGTGAAGTCTCTGTGCATGGAGAATCAGATTTGGCGTGACCTCGCGCAAACGAACGAAGCCACGGCGAATGCTCTGCGGTGTAATCTGGAGCAAGTGCTGGCGCAGCGTGGCGGAATGGGGGAAGATGGCGCCGGCGCCGGCGCTGATTTAATGGACGACGCTCAGTCTTGCTGCGGGAGCACCGGCGAAGACGGTGAAGAGGAGAAAGAGGTGGGGTGGCGCACAATAGCAGCGGGGTGCGCAGGGGTGAAGGATAAGGAGGAAGGTGGTTGTGGGAAAATGATGAGTGGTGAGAGTAATGGGCGGTTGTGCAGGAACTGTGGAAAAGAAGAGTCGTGCGTGCTGATTTTGCCGTGCCGGCACCTGTGTTTGTGTACTGTGTGTGGGTCTACACTCCACATTTGTCCTATATGTAAATCCTTCAAGACTGCTAGTGTCCATGTTAACATGTCCTAA 978 0.5153 MAVEARHFNLFPSPLITNRQVVNSVDANINMYNAQQIGYSSFLPLSGAVTEPVLPSSVYNSLGNAGKSESGLTYNNSVVVPPMSRKRSRENYSYNDSFSFLGQDVSLQIQQQQLDIEHLIMQRMEKVRIEIDEKRKRQARRIIEAIEIGVMKKLKAKEEEIEKIGKLNWALEERVKSLCMENQIWRDLAQTNEATANALRCNLEQVLAQRGGMGEDGAGAGADLMDDAQSCCGSTGEDGEEEKEVGWRTIAAGCAGVKDKEEGGCGKMMSGESNGRLCRNCGKEESCVLILPCRHLCLCTVCGSTLHICPICKSFKTASVHVNMS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01657 325 CDD mRING-HC-C3HC5_CGRF1-like 276 313 - -
Spst5g01657 325 FunFam BOI-related E3 ubiquitin-protein ligase 1 255 325 - -
Spst5g01657 325 Pfam Zinc finger, C3HC4 type (RING finger) 276 314 - -
Spst5g01657 325 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 68 322 IPR017066 -
Spst5g01657 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 324 IPR013083 -
Spst5g01657 325 Coils Coil 154 174 - -
Spst5g01657 325 ProSiteProfiles Zinc finger RING-type profile. 278 313 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01657 Spst-Chr5 51474889 51476099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01657 250 314 Miscellaneous Gene Families AT4G39050 30.769 1.04e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01657 K19042 - gmx:100809593 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01657 5 51474889 51476099 Spst5g01657 5 51474889 51476099 ECH
Spst5g01657 5 51474889 51476099 Spst11g00463 11 25527478 25529020 PCT