Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01653 ATGCAGATACTTTTGTTGTTAAGTCATAAATCAGTTTCACCACTTAAGATCCTATTAGAAGCTGCCAAAATGTCGCGGAAGGGTTTAATGGAACAAGACCTGAGTAAGTTGGATGTCACAAAGTTGCATCCACTTTCTCCAGAAGTCATATCTCGGCAAGCTACTATTAATATTGGCACTATTGGTCATGTGGCACATGGCAAGTCAACAGTTGTGAAAGCAATATCTGGTGTCCAGACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTTCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGGAAAGAAGATAGTCCTATGTGTGATGTGCCAGGGTTTGAAAATAGCAAGATGAAATTGCTGAGACATGTTTCATTTGTGGATTGTCCGGGACATGATATTCTCATGGCTACTATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTGCTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACCTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAGCATATAATAATCCTTCAGAACAAGGTTGACTTGATCCAAGAAAATGTGGCAATCAATCAGCATGAAGCAATTTCAAAGTTTATACAAGGAACTGTAGCTGATGGTGCACCAGTAGTACCTATTTCAGCACAGTTAAAGTATAATATTGATGTTGTGTGTGAGTATATTGTGAAGAAGATCCCAATCCCTGAGAGGAACTTTGTTTCTCCACCTAATATGATTGTAATTCGATCATTTGATGTCAATAAACCTGGGTTTGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTGAATCAATTCATTGAAGTTCGACCTGGCATTGTTGTTAAAGATGAGAGTGGAAATATCCGATGCACACCCATATACTCAAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTGCCTGGAGGCCTTATCGGTGTTGGGACAACAATGGATCCCACATTGACACGTGCTGATAGGTTGGTAGGTCAAGTTCTAGGAGAGGTCGGATCACTACCTGAGGTTTTTGTGGAACTCGAGGTAAACTTTTTCCTACTTAGACGGCTTCTTGGTGTCCGAACAAAAGGGTCAGAGAGACAGGGGAAGGTATCCAAGCTAGCTAAAGGAGAGATGCTAATGTTGAACATAGGATCAATGTCAACGGGGGCTAGAGTAATTGCTGTGAAGAATGACTTGGCAAAGTTGCAACTTACATCCCCTGTGTGCACAAGCAAGGGTGAGAAGATAGCACTCAGTCGACGTGTTGAGAAGCATTGGCGTCTTATTGGGTGGGGCCAAATCCAAGCTGGAATCACTCTTGACGTCCCTCCTGCCCCCCAACTTAGTTGA 1470 0.4231 MQILLLLSHKSVSPLKILLEAAKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCSRPMCYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPQLS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01653 489 CDD eIF2_gamma_III 380 474 IPR015256 -
Spst5g01653 489 CDD eIF2_gamma 56 263 IPR044128 GO:0005525
Spst5g01653 489 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 53 262 IPR000795 GO:0003924|GO:0005525
Spst5g01653 489 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 24 482 - -
Spst5g01653 489 PRINTS GTP-binding elongation factor signature 162 173 IPR000795 GO:0003924|GO:0005525
Spst5g01653 489 PRINTS GTP-binding elongation factor signature 57 70 IPR000795 GO:0003924|GO:0005525
Spst5g01653 489 PRINTS GTP-binding elongation factor signature 146 156 IPR000795 GO:0003924|GO:0005525
Spst5g01653 489 PRINTS GTP-binding elongation factor signature 200 209 IPR000795 GO:0003924|GO:0005525
Spst5g01653 489 Gene3D Translation factors 380 478 - -
Spst5g01653 489 SUPERFAMILY Translation proteins 263 377 IPR009000 -
Spst5g01653 489 FunFam Eukaryotic translation initiation factor 2 subunit gamma 264 379 - -
Spst5g01653 489 CDD eIF2_gamma_II 264 377 IPR044127 GO:0000049
Spst5g01653 489 Pfam Elongation factor Tu domain 2 291 373 IPR004161 GO:0005525
Spst5g01653 489 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 378 475 IPR009001 -
Spst5g01653 489 FunFam Eukaryotic translation initiation factor 2 subunit gamma 380 479 - -
Spst5g01653 489 Pfam Elongation factor Tu GTP binding domain 55 259 IPR000795 GO:0003924|GO:0005525
Spst5g01653 489 Pfam Initiation factor eIF2 gamma, C terminal 385 474 IPR015256 -
Spst5g01653 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 265 IPR027417 -
Spst5g01653 489 Gene3D - 53 263 IPR027417 -
Spst5g01653 489 Gene3D Translation factors 265 379 - -
Spst5g01653 489 FunFam Eukaryotic translation initiation factor 2 subunit gamma 53 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01653 Spst-Chr5 51414942 51419198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01653 24 486 Eukaryotic Initiation Factors Gene Family AT1G04170 90.948 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01653 K03242 - gmx:100784099 914.064