Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01634 ATGATAGATGTTGACCTTAACAAGTGTGAACCGTGGGACATTCCTGAAACAGCATGTGTGGGAGGGAAAGAGTGGTATTTCTATACACAAAGAGACAGAAAGTATGCAACAGGGCTACGCACAAATCGTGCCACTGCCTCAGGGTATTGGAAGGCCACAGGGAAGGACAGGCCTATCCTTCGCAAGGGTACCCTTGTTGGTATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGAAAAACTGAATGGGTCATGCATGAGTTTCGCATTGAAGGTCCCCATGGACCCCCTAAAATTTCTTCTTCCAAGGAAGACTGGGTTTTGTGTAGGGTGTTCTATAAGAACAGAGAAGTTTCAGCCAAACCTAACATGGGTAGCTGCTACGAAGACACAGGCTCTTCATCTCTTCCTGCATTAATGGACTCTTACATAAGTTTTGATCAAACTCAAGCTCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTTTCTCAGAACCAAGCAATCCCCATTTTCAACCACATGACAACATCCATGGAGCCTAAATTACCTGCAACTACATATGGAGGAGCACCAAATTTAGGTTATCGCTTAGACCCTTTATCCTGTGACAGAAAAGTGTTGAAAGCTGTTTTGAATCAGATCACAAAGATGGAAAGGAATCCTCTGAACCATAGTCTTAAAGGTTCACCACCAAGCTTAGGTGAGGGAAGCTCAGAGAGTTACTTATCTGAAGTGGGGATGCCTCACCTGTGGAACAATTACTGA 786 0.4466 MIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNREVSAKPNMGSCYEDTGSSSLPALMDSYISFDQTQAHADEFEQVPCFSIFSQNQAIPIFNHMTTSMEPKLPATTYGGAPNLGYRLDPLSCDRKVLKAVLNQITKMERNPLNHSLKGSPPSLGEGSSESYLSEVGMPHLWNNY 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01634 261 Gene3D NAC domain 1 123 IPR036093 GO:0003677|GO:0006355
Spst5g01634 261 ProSiteProfiles NAC domain profile. 1 118 IPR003441 GO:0003677|GO:0006355
Spst5g01634 261 MobiDBLite consensus disorder prediction 228 247 - -
Spst5g01634 261 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 167 - -
Spst5g01634 261 MobiDBLite consensus disorder prediction 228 246 - -
Spst5g01634 261 SUPERFAMILY NAC domain 2 119 IPR036093 GO:0003677|GO:0006355
Spst5g01634 261 Pfam No apical meristem (NAM) protein 3 94 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01634 Spst-Chr5 51156684 51160683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01634 1 259 NAC Transcription Factor Family AT1G56010 59.140 1.68e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g01634 NAM 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01634 - - gmx:100301890 484.567