Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01571 ATGTCCAATGGATCTCTAGATAAACACCTTCCAGGTGGAAAACTGTCTTGGAAGAAAAGGGTAGAGATATGCAGAGGAGTAGCACGTGGACTACACTACCTTCACACAGGAGCCAAGCGTTCCATGTTTCACTGTATCCTCAGAGCCAGTACCATTCTCTTGGATGGCAATATGGAGCCAAAACTCGCAGTTTTCGGTCTCAGCGTTCACGGACCACGATTCAATCCAAAGCCTCAGCCGCAGCAGATTAATGTAGATCATATTATAGGTGTTGTTGGCTACATGCCACTGGAGTACGTGATGGATGGAGACCTTATAGACAAGGTTGATGAATAA 336 0.4583 MSNGSLDKHLPGGKLSWKKRVEICRGVARGLHYLHTGAKRSMFHCILRASTILLDGNMEPKLAVFGLSVHGPRFNPKPQPQQINVDHIIGVVGYMPLEYVMDGDLIDKVDE 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01571 111 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 110 - -
Spst5g01571 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g01571 111 Pfam Protein tyrosine and serine/threonine kinase 1 71 IPR001245 GO:0004672|GO:0006468
Spst5g01571 111 SUPERFAMILY Protein kinase-like (PK-like) 1 103 IPR011009 -
Spst5g01571 111 Gene3D Transferase(Phosphotransferase) domain 1 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01571 Spst-Chr5 50149693 50150114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01571 1 110 Receptor kinase-like Gene Family AT5G59700 43.860 3.40e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst5g01571 PK_Tyr_Ser-Thr 8e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01571 - - pvu:PHAVU_008G028400g 149.828