Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01522 ATGCCTCCAAACACCTACTTCAACTGGGACGCTATTCAAATTTCAAACCCCTTCTATGAAGTCATGCAGGAAGAAATAACAACGCCAAACCTCCAACACCTTTTCTCCTACTCAGATGAAAGCCCTTTTCTTTCAAACGGGCTTTTCGAGCCGTACATACACCCTTCTTATGATTCCTTTGCTTCTCTTACTCATCGTGATAGTTTTCCAATTCAAGAATATTACCATCTTCCACCATGTCCCAAACGTCAAAAGTTATCCCATGAAAGAGAAATCCACTCCTCACTGCAAGACTTTACACAAACAGTGCTTCCATCCGATTACTTAGAGGGGTTTGCTGTGCCTTATGATACTTGTTATTCCTCGCAGACAGAGCAGCTGCAACAACACTTCTCCTCCTGTGAGTTTCCACCACGATGTGTGGATTTTCAGTTTGAGAAAACAGGAAATGAAAATACCATATCTCGGCAGAGCGTAGCAGCACGTGAAAGAAGAAGAAAGATCACTGAGAAGACCCAAGAGCTTGGGAAGTTGGTTCCTGGAGGACCCAAGATGAACACAGGTGAGATGTTTCATGCAGCTGCAAAGTATGTGAAGTACCTTCAAGCACAAGTTGAAATGCTTGAACTCATGCACTCCCTCGAGAGAGATCTGGGCATTCGATTAGAGGAAGAGAATATGGAGAAGGAGAAAGCAGGAGTTGAAACGCTACGGGGTCTGGTTGTGTCTCCGTTTGTTGAAGAGAAGTTATACAGAGAGGAAAGGTGCTTGGTGCCAACACAAATCATCAACACATTCACAAATCTTCAACATCTTCAATCAAGCCCTACCATCCTTCACCATCTTAAGCACCTTCTCATTGAGACAAACACTGAGAAGAAAGCAAAGCAAGAATAA 897 0.4337 MPPNTYFNWDAIQISNPFYEVMQEEITTPNLQHLFSYSDESPFLSNGLFEPYIHPSYDSFASLTHRDSFPIQEYYHLPPCPKRQKLSHEREIHSSLQDFTQTVLPSDYLEGFAVPYDTCYSSQTEQLQQHFSSCEFPPRCVDFQFEKTGNENTISRQSVAARERRRKITEKTQELGKLVPGGPKMNTGEMFHAAAKYVKYLQAQVEMLELMHSLERDLGIRLEEENMEKEKAGVETLRGLVVSPFVEEKLYREERCLVPTQIINTFTNLQHLQSSPTILHHLKHLLIETNTEKKAKQE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01522 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Spst5g01522 298 Pfam Helix-loop-helix DNA-binding domain 160 202 IPR011598 GO:0046983
Spst5g01522 298 Gene3D - 154 232 IPR036638 GO:0046983
Spst5g01522 298 SMART finulus 158 207 IPR011598 GO:0046983
Spst5g01522 298 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 157 223 IPR045843 GO:0003700|GO:0006355
Spst5g01522 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01522 Spst-Chr5 48089976 48091075 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01522 154 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 44.361 8.84e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g01522 HLH 0.00021 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01522 - - gmx:102665938 300.441