Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01520 ATGATGCCTCCAAACACCTACTTCAACTGGGACGCTATTCAAATTTCAAACCCCTTCTATGAAGTCATGCAGGAAGAAATAACAACGCCAAACCTCCGACACCTTTTCTCCTACTCAGATGAAAGCTCTTTTCTTTCAAACGGGCTTTTCGAGCCGTACATACACCCTTCTTATGATTCCTTTGCTTCTCTTACTCATCGTGACAGTTTTCCAATTCAACAAGATTACCATCTTCCACCATGTCCCAAACGTCAAAAGTTATCCCATGAAAGAGAAATCCACTCCTCACTGCAAGACTTTACACAAACAGTGCTTCCATCCGATTACTTAGAGGGGTTTGCTGTGCCTTATGATACTTGTTATTCCTCGCAGACAGAGCAGCTGGAACAACAGTTCTCCTCCTGTGAGTTTCTACCACAATGTGTGGATTTTCAGTTTGAGAAAACAGGAAATGAAAAAACCATATCTCGACAGAGCGTAGCAGCACGTGAAAGAAGAAGAAAGATCACTGAGAAGACCCAAGAGCTTGGGAAGTTGGTTCCTGGAGGACCCAAGATGAACACAGGTGAGATGTTTCATGCAGCTGCAAAGTATGTGAAGTACCTTCAAGCACAAGTTGAAATGCTTGAACTCATGCACTCCCTCGAGAGAGATCTGGGCATTCGATTAGAGGAAGAGAATATGGAGAAGGAGAAAGCAGGAGTTGAAACGCTACGGGGTCTGGTTGTGTCTCCGTTTGTTGAAGAGAAGTTATACAGAGAGGAAAGGTGCTTGGTGCCAACACAAATCATCAACACATTCACAAATCTTCAACATCTTCAATCAAGCCCTACCATCCTTCACCATCTTAAGCACCTTCTCATTGAGACAAACACTGAGAAGAAAGCAAAGCAAGAATAA 900 0.4322 MMPPNTYFNWDAIQISNPFYEVMQEEITTPNLRHLFSYSDESSFLSNGLFEPYIHPSYDSFASLTHRDSFPIQQDYHLPPCPKRQKLSHEREIHSSLQDFTQTVLPSDYLEGFAVPYDTCYSSQTEQLEQQFSSCEFLPQCVDFQFEKTGNEKTISRQSVAARERRRKITEKTQELGKLVPGGPKMNTGEMFHAAAKYVKYLQAQVEMLELMHSLERDLGIRLEEENMEKEKAGVETLRGLVVSPFVEEKLYREERCLVPTQIINTFTNLQHLQSSPTILHHLKHLLIETNTEKKAKQE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01520 299 SMART finulus 159 208 IPR011598 GO:0046983
Spst5g01520 299 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 157 224 IPR045843 GO:0003700|GO:0006355
Spst5g01520 299 Pfam Helix-loop-helix DNA-binding domain 161 203 IPR011598 GO:0046983
Spst5g01520 299 Gene3D - 153 233 IPR036638 GO:0046983
Spst5g01520 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Spst5g01520 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01520 Spst-Chr5 48065999 48067101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01520 152 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 43.382 1.18e-24 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g01520 HLH 0.00021 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01520 - - gmx:102665938 302.753