Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01519 ATGGCTCCAACCACCTACTTCAACTGGGACACTATTCAAATTTCAAACCCCTTCAATGAAGTCATGCAGGAAGAAGTAACACCAAACCTTCAACACCTTTTCTCCTACTCAGATGAAAGCCCTTTTCTTTCAAACGGGCTTTTCGAGACAAACATACACCCTTCAGATATTCACCCTCCTTATGATTCCTTTGTTTCTCTTACTCATCCTGACAGTTTTCCAATTCAAGAAGATTACCATCTTCCACCATGTCCTAAACGTCAAAAGCTATCCCATGAAAGAGAAATCCACTCCTCAACTCAAGACTTTACTACACAAACAGTGCTTCAATCCGATTACGTAGAGGGGTTTGTTGTGCCTTATGATAATTGTTATTCCTCGCATACAGAGGAGCTGAAACAACACTTCTACTGTGAGTTTCCACCACAATGTGTGGATTTTCAGTTTGAGAAAAAAGGAAATGAAAAAACCATATCTCCACAGAGCGTAGCAGCACGTGAAAGAAGAAGAAAGATCGCTGAGAAGACCCAAGAGCTTGGGAAGTTGGTTCCTGGAGGACCAAAGATGAACACAGCTGAGATGTTTCATGCAGCTGCAAAGTATGTGAAGTACCTTCAAGCCCAAATTGAGATGCTGGAACTCATGCACTCCCTCGAGGAGAAGGAGAAAGCAGGAGTTGGGTCTGAAACGCTACGGGGTCTGGTTGTGTCTCCGTTTGTTGAAGAGAAGTTATACAGAGAGGAAAGGTGCTTGGTGCCAACACAAATCATCAACACATTCACAAATCTTCAACATCTTCAATCAAGCCCCACCATCCTCCACGATCTTAAGCACCTTCTCATTGCGTCAAACACTGAGAAGAAAGCAAAGCAAGAATGA 879 0.43 MAPTTYFNWDTIQISNPFNEVMQEEVTPNLQHLFSYSDESPFLSNGLFETNIHPSDIHPPYDSFVSLTHPDSFPIQEDYHLPPCPKRQKLSHEREIHSSTQDFTTQTVLQSDYVEGFVVPYDNCYSSHTEELKQHFYCEFPPQCVDFQFEKKGNEKTISPQSVAARERRRKIAEKTQELGKLVPGGPKMNTAEMFHAAAKYVKYLQAQIEMLELMHSLEEKEKAGVGSETLRGLVVSPFVEEKLYREERCLVPTQIINTFTNLQHLQSSPTILHDLKHLLIASNTEKKAKQE 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01519 292 Pfam Helix-loop-helix DNA-binding domain 166 206 IPR011598 GO:0046983
Spst5g01519 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 215 IPR036638 GO:0046983
Spst5g01519 292 Gene3D - 158 225 IPR036638 GO:0046983
Spst5g01519 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Spst5g01519 292 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 151 230 IPR045843 GO:0003700|GO:0006355
Spst5g01519 292 SMART finulus 162 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01519 Spst-Chr5 48060301 48061451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01519 155 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 48.031 2.85e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst5g01519 HLH 9.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01519 - - gmx:102665938 314.694