Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01479 ATGGCCGCAAGAGTCCGGGCGGATCGTGCAGTGTTCGCCAACTGTCGTTTTGAGGGCTACCAAGACACTCTATACGTCCAAGCCCACAAACAGTTCTACAGGAGCTGCATCGTTAGTGGCACAATTGACTTCATCTTTGGTGATGCAGCTGTGGTGTTCCAGAACTGCATCATGGTTGTGAGGAAGCCAAATGACAACCAGCAGAACATGGTGACAACACAAGGGAGAGAGGACAAGCAACAAGCCACTGGAATTGTGCTCCAGAAGTGCACAATCAAACCCGATGACAAACCGGTCCCGGTAAAGGACAAGATCAGGAGCTACCTTGGAAGGCCATGGAAGGAGTTCTCAAGAACCATTGTGATGGAATCGAAATAG 378 0.5 MAARVRADRAVFANCRFEGYQDTLYVQAHKQFYRSCIVSGTIDFIFGDAAVVFQNCIMVVRKPNDNQQNMVTTQGREDKQQATGIVLQKCTIKPDDKPVPVKDKIRSYLGRPWKEFSRTIVMESK 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01479 125 SUPERFAMILY Pectin lyase-like 2 124 IPR011050 -
Spst5g01479 125 PANTHER PECTINESTERASE 2 124 - -
Spst5g01479 125 Gene3D - 1 125 IPR012334 -
Spst5g01479 125 Pfam Pectinesterase 2 124 IPR000070 GO:0030599|GO:0042545
Spst5g01479 125 ProSitePatterns Pectinesterase signature 2. 38 47 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01479 Spst-Chr5 45710642 45711019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01479 1 125 Carbohydrate Esterase AT2G26450 60.000 2.11e-52 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01479 - - gmx:100784679 215.312