Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01449 ATGAAGATTCAGTGCAACGTGTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCGGATGAGGCTGCGCTTTGTTGGGAGTGTGATGAAAAGGTTCATGCTGCTAACAAGCTTGCCAACAAGCACCAGAGAGTTCCTCTTTCTAGCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGAAGCATTCGGCTATTTTTTCTGTCTAGAGGACCGGGCTCTGTTCTGCAGAAAATGTGATTTGGCAATACACACTGCAAATGCTTATGTATCTGGTCATCAAAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGCGCTTCTTCAACTTCATTGAAATCAGATTCTGGGGAGAAAATTTCGGATACAAAGTCGTCTTCTATCTCTAGAAAGGCTTCTACAGTGCCTCAGCCATCAGAATACAATGAATTGTTACCTATTGAAGTTGGAGGAGTTGGAGGCTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACAGCTGGAAATATCTCACAATGGACAATAGATGAATTTATTGGCCTAAACGAGTTTAGTCAGAATTATGATTACATGGAAGGATCATCAAGGGCTGACAGCGGTAAGTTAGGTGATTCTGATTCTCCTGTTTTAAGATCCGGTGATGAGGAAATGGAGGAGGATGACTATTTGGAACGTGTTCCAGATTCGTCATGGACAGTTCCTCAGATTCCTTCCCCACCTACAGCTTCAGGGTTACACTGGCCAAAAGACCCTCGTTATTCATCTCATAGTCTTCTGTTTGTTCCTGATATAAGCTTTTCTCACATGCAACACTCTCAGATCAGTAGTATTTTTTCAAGACGCAGGAAGCAGCTTTAA 879 0.4403 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLANKHQRVPLSSSSSHMPKCDICQEAFGYFFCLEDRALFCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSTSLKSDSGEKISDTKSSSISRKASTVPQPSEYNELLPIEVGGVGGFPPAKESFGGGSTAGNISQWTIDEFIGLNEFSQNYDYMEGSSRADSGKLGDSDSPVLRSGDEEMEEDDYLERVPDSSWTVPQIPSPPTASGLHWPKDPRYSSHSLLFVPDISFSHMQHSQISSIFSRRRKQL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01449 292 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Spst5g01449 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Spst5g01449 292 FunFam B-box zinc finger protein 22 1 93 - -
Spst5g01449 292 CDD Bbox1_BBX-like 5 47 - -
Spst5g01449 292 MobiDBLite consensus disorder prediction 199 255 - -
Spst5g01449 292 MobiDBLite consensus disorder prediction 110 143 - -
Spst5g01449 292 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Spst5g01449 292 Gene3D Classic Zinc Finger 1 92 - -
Spst5g01449 292 SMART bboxneu5 52 99 IPR000315 GO:0008270
Spst5g01449 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Spst5g01449 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 272 - -
Spst5g01449 292 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01449 Spst-Chr5 42034609 42037465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01449 1 290 C2C2-CO-like Transcription Factor Family AT1G78600 47.401 8.15e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Spst5g01449 zf-B_box 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01449 - - gmx:100790959 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01449 5 42034609 42037465 Spst5g01449 5 42034609 42037465 ECH