Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01388 ATGAAGAGGAACAGTTTGATGAAAGACTACACTCACAGTTGTGCTAACAAGAACCCAACAAAAGACTTCACCCATGTTGTCAACTGCTACAACAAGCAGAACCAAATGGCTAGAGAGTTTTGGGAGTGCAGCGGCAACTCTCACAGCAATCCAGATCAGGACTATGTGAATGGCTTCCCATGGCCTCCAAGATCATACACTTGTAGCTTCTGCAGAAAGGAGTTCAAGTCTGCTCAGGCACTTGGTGGACATATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCGGCTGAAGGTCAAGGCCATATGTTCAACCTTAACCTCGACCCTACTACAACTAACCCTAACAACTCATGCTCACCTCTGTCCTTGTTACCATCATCTTCATCTTCAGCAACTCTCAAACCAGTCACTTGCACATTACCCTTGTTTGTTTCTCCCACTCCTCCTTCACCTTCTTCTGAGTTGAAGAGATGGGTAGTTATGGATGGCATTCTGTTGAACCCTTTGAGCACAAAGACCCCAGAGCACTCTAAGTCAAAGATTCCAGAATCTTTATCAGCTGGGGTTGGAGAATATGATCATGCTTTTGCAAGAGAAGATGGGTGCAAAGTGTTGAAGAAAGGAGAGATTCTGAGGATGGACTTGGAGATAGGTTTGCCTAGAGGTTATGATTTAGATCTGGAGCTTCGTTTGGGCACTACTTACTCTTAG 726 0.4532 MKRNSLMKDYTHSCANKNPTKDFTHVVNCYNKQNQMAREFWECSGNSHSNPDQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPAEGQGHMFNLNLDPTTTNPNNSCSPLSLLPSSSSSATLKPVTCTLPLFVSPTPPSPSSELKRWVVMDGILLNPLSTKTPEHSKSKIPESLSAGVGEYDHAFAREDGCKVLKKGEILRMDLEIGLPRGYDLDLELRLGTTYS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01388 241 Gene3D Classic Zinc Finger 62 107 - -
Spst5g01388 241 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Spst5g01388 241 PANTHER OS07G0101800 PROTEIN 48 238 - -
Spst5g01388 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Spst5g01388 241 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Spst5g01388 241 SMART c2h2final6 66 88 IPR013087 -
Spst5g01388 241 Pfam C2H2-type zinc finger 66 90 - -
Spst5g01388 241 MobiDBLite consensus disorder prediction 109 126 - -
Spst5g01388 241 MobiDBLite consensus disorder prediction 96 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01388 Spst-Chr5 37844246 37844971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01388 41 237 C2H2 Transcription Factor Family AT3G23130 41.709 3.20e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g01388 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01388 - - var:108333719 407.912