Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01385 ATGTCGCTGAGGAAGGTATTCCGTACCCGCAAGTTCTCTAGATCGTTCAAGGAGGCGCCGGCGGTGGGCGCCGGCGAGGGCGGGGTCGCCGCCGAGGGGGACGACCACGCGCACTGGAATGGTTGGTCCAACATGCTGCCGGAGATCCTCGGCGAGATCGTGCGGCGCGTCGACGCCGCCGAGGAGCAGTGGCCCAACCGCCAGAACGTCGTGTCGTGCGCGTGCGTGTGCAAGCGCTGGCGTGACATCACGCGCGAGGTCGTGCGTGAGCCCTTGCACACCGGGAAAATCACTTTCCCTTCGTGCCTAAAACAGCCAGGACCACGTGAGGTTCCCCACCAGTGTCTTATAAAGCGGAACAAAAAGACCTCAACATTTTATCTATATCTTGCCCTAACACCATCATTCACAGATAAAGGGAAGTTTCTGCTAGCAGCTAGGAGATATAGGTGTGGTACACATACCGAATACATAATTTCACTCGATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGTTTATCTTCCAATGACAACTTGTTACTGGACTCTTTTCACAGTTCGGATTTTCTTGGAACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCGAGTCGACGGTTTGCCAGTAAGCAGATAAGCCCGCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTGTTGAAATCAAGAGGGCCAAGGAGAATGGTTTGCTCATTGAAGTGTCCAATGACTCCTGTCGCATCAACAGGTGAAAGTTCAGATAGCCCATCTCTTGATGACCATAAGATGATTGATAAAGAACAAGCTGCTTCTGGCTGCACAATCTTGAAGAATAAAGCTCCAAGGTGGCATGAGCATTTGCAATGCTGGTGTTTGAATTTCCATGGTCGTGTGACAGTGGCCTCAGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAACCAGGAGGTAAAGGAGATGAGGAAACAGTTCTCCTCCAATTTGGTAAAGTAGGGGATGATACTTTCACCATGGATTATAGACAGCCCTTATCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1167 0.5004 MSLRKVFRTRKFSRSFKEAPAVGAGEGGVAAEGDDHAHWNGWSNMLPEILGEIVRRVDAAEEQWPNRQNVVSCACVCKRWRDITREVVREPLHTGKITFPSCLKQPGPREVPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSLSSNDNLLLDSFHSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPMTPVASTGESSDSPSLDDHKMIDKEQAASGCTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01385 388 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Spst5g01385 388 SUPERFAMILY F-box domain 37 85 IPR036047 GO:0005515
Spst5g01385 388 Pfam Tub family 103 383 IPR000007 -
Spst5g01385 388 Gene3D Tubby Protein; Chain A 98 388 IPR025659 -
Spst5g01385 388 PANTHER TUBBY-RELATED 40 386 - -
Spst5g01385 388 MobiDBLite consensus disorder prediction 206 225 - -
Spst5g01385 388 Pfam F-box domain 42 87 IPR001810 GO:0005515
Spst5g01385 388 ProSitePatterns Tub family signature 2. 373 388 IPR018066 -
Spst5g01385 388 PRINTS Tubby superfamily signature 366 388 IPR000007 -
Spst5g01385 388 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Spst5g01385 388 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Spst5g01385 388 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Spst5g01385 388 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Spst5g01385 388 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Spst5g01385 388 PRINTS Tubby superfamily signature 345 364 IPR000007 -
Spst5g01385 388 SUPERFAMILY Tubby C-terminal domain-like 93 388 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01385 Spst-Chr5 37550133 37554560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01385 1 388 TUB Transcription Factor Family AT1G53320 70.483 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Spst5g01385 Tub 3.5e-96 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01385 K19600 - gmx:100808096 667.922