Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01327 ATGGATTGTGAAATGGTTGGTGTTGGTCAAGGAAACAAAAGTGCTCTTGGAAGAGTAACGCTGGTCAATAAGTGGGGAAATGTTATTTATGATGAGTTTGTTCGGCCAATTGAACGGGTTGTTGACTTCCGCACTAAAATTAGTGGCATAAGACCTCGAGATCTTAGGAAAGCAAAGGAGTTTTGGACTGCTCAGAAGAAAGTGTCAGAGTTGATCAACGGAAGGATCCTTGTTGGTCATGCCTTGTCCAATGACCTTAAGGCATTATTATTAAGTCATCCCAAAAAGGATATAAGAGATACCTCAGAGTACCAGCCATTTTTAAGATCAGGTAGCAAAAGAGCACTGCGGCATCTTTCTGCCGAACATCTGGGTGTGAAGATCCAAATAGGAGAGCACTGCCCAATAGAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGAAATAAGAAGGAATGGGAGAAGAGCACAAAAGACCAATCTCGGTTCAATCAGAAGCAAAGGAAAATGAAGCAGAAAAAGAAGCGGGAGATTGAAGATGCTTCAAACGCAAACCATGTTGAAATCGGATCATAG 576 0.4219 MDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTKISGIRPRDLRKAKEFWTAQKKVSELINGRILVGHALSNDLKALLLSHPKKDIRDTSEYQPFLRSGSKRALRHLSAEHLGVKIQIGEHCPIEDARAAMLLYQRNKKEWEKSTKDQSRFNQKQRKMKQKKKREIEDASNANHVEIGS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01327 191 SUPERFAMILY Ribonuclease H-like 1 154 IPR012337 -
Spst5g01327 191 Coils Coil 164 184 - -
Spst5g01327 191 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 1 175 IPR047021 GO:0004527
Spst5g01327 191 Pfam Exonuclease 1 146 IPR013520 -
Spst5g01327 191 MobiDBLite consensus disorder prediction 155 191 - -
Spst5g01327 191 FunFam Interferon-stimulated exonuclease gene 20 1 165 - -
Spst5g01327 191 Coils Coil 136 156 - -
Spst5g01327 191 CDD REX4_like 1 147 IPR037431 GO:0006364|GO:0008408
Spst5g01327 191 Gene3D - 1 175 IPR036397 GO:0003676
Spst5g01327 191 SMART exoiiiendus 1 155 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01327 Spst-Chr5 28902136 28927866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01327 1 186 C2H2 Transcription Factor Family AT5G40310 32.227 2.18e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01327 K18327 - gmx:100819122 325.094