Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01312 ATGTTCATCAGCAACGAAGTAGAGGATTTATTTGATGATAACTTTGAAGGATCTAACGAAGAAAGACAGATTTTTTCAGAGGTCTTTTCTGGTAATGACATTTTCCAGTCTAGTCTTAAGTGTAGTGTTCCTGGTGCTGTCAGCTTTGAACATGAATCTGCCAAAAAGACATTTAAATCATTCTGCTCTAGTAATGAAAACTCAGTTGCATTGCATCCCTTGGCGTCTAGACTTTCACACCCTGAAGAGGAGAACTTTAATGTAATTAAGCCTTCCAAAGAGGCTGCTACAGGATATGTGCCAGAGAGTTTCATTTGTGAAGACCAGAATGACGAGGATGTGAATGTCAAACGGATGAAATTTTCTCTGCATGAACTTGCTTGTAGCCGATCTGATTCAGAAAAAAACTTGAGTTCATCACAACTTTCAAAAGTAGCAGTTTCTAACCTGTCTTGTGCTGCTACAGGCTGTGATAGTGAACCAATTGCATTTCGTTTGGTTGAATCATCCAAACATGGTGTGATATCTAGCTGTTATCTATTGAACCATAACAAGTTAAATAAACAAGCTGTTAAGGAGGATGTAAATGTTACAAATTTTAACACAACAGCAGATGGAACTATTGCAAAAGAAATGTCTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCACAGGAAAGCTTTGCGAGCAGGCTTGTAGTTACAAGCCCATCAATCACTGTTGTAAAGAAGTCCGGGTCTCCTTTAAATCCTGAGGAAATGCCGGAATCTACTAATGTGGACATCTCAAAACAGGAAGAGGACCCTCGTACTATACTGCAATTTCAAATTGTTCAGTTGCTTACGCTGGCAGGATGGTCTATTGAGAAGCGTCAACGGCCAAGTAGGCGTTATCCAGAGTCAGTTTATAGGACACCAGAGGGAAAGCCTATTCGGGAATTTACAAAGGCTTGGAGAATATGTGGTGAGCTATTGTCTGTTGAAAAATGCAATTTAGTGTGCAGAGCTTGTAAGGAGTGGACTGATATTAGTCAATTCTGGTCTGATCTATCTAGTGCACTGATAAATGTTGAAAAAACAAAGATACAGTCGGAAGACCCTGCTGCTATTTTAGCGTATCGATGGTGGCTTTTGGATCCTTTTGTAGTGGTTATATTTGTTGATAGAAAGATTGGTGCCCTGAAAAAGGGAGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGTAAGTATAAGATGGCATGTGCTTCCATTGATTCAAGCTCCAGAAACTTGAATCAGGTACCTGGAGGGTCTAATGTAAATGCTGTTCATCAAGCCAAAATTAGAAATTACAGTGGTCTTAAAAAGCATAGCTCAGAAAACTATCTGGGAACAACTAAATTTATCGATGGAGATGTGCCAATGGACATGTCAGAAGAAAATAATGCATCTGGTGTGAGCTATGGCCTGGTTCATTCTCATGACTCAAGGGCTATGCAACAGTCAGAATGTAGTGAGGAAGAGGGTGGGAAAATCTTAGTAGATTCTGCATTTGAGAAAGATAACACATATTCTGCTTTCAATGTTACTCTTAGAAAGAAAATGCGACGAAAATGCAAAAGGGTATCTGAAATTAAACTGAGTATGTTCTACCATGGTGACACGCCGGGCTCAACTGTTACTGACCAGGTGCAGTCACTAGATGGTGAAGCATGTGGTTTGGAAGAGGTCCAGAATTATCTAGTTGACAATGCGGGAAAGAAAAGAAGCAGCAGAAAGTTACCATCTATCAGTGCAGTACAGAGAAATATCAGGAAAACAAACTACTCCATAACTGGAACGGATAGGTCAAACAGTTGCCAGATCAAAGATGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTTGGGCCTAAGGCAATCTGGGGTAATTCTAGTGCTAAATCCTGCAAATCAAGGGGCCAGAGAAAGCTTAAAAGCCAGAAGGGTCGTTGCAGGTTGCTGCCAAGGAACCCCTGTAATGGAGGGAAGTACAATAAGGATTGTCATAGGTTTTATTTGGGTGCAAGGACAATATTGTCCTGGTTGATTGATAATGGGGTCATATCTTTAAATGATGTGATCCAATACCGAAATGCTAAGGATAACGTTGTGATTAAGGATGGTAGGATCACCAAAGATGGTATTATTTGTACATGTTGTGGTAAGGTGCTTACATTATCAGAGTTCAAGTTGCATGCTGGGTTTACATTCAATCGCCCCTGCATGAATATTTTTATGGAGTCTGGTGAGCCCTTTACATTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCTAAATCAAGCTGTGCATGCTGATGATAATGACAAAAATGATGATTCGTGCGGGTTGTGTGGTGAAGGGGGTGAGCTGATATGTTGTGATAACTGTCCATCTACTTTTCACCTAGCTTGTTTGTCCACTCAGGAGATCCCAGATGGTGATTGGTACTGTGCAAACTGCACTTGTAGGATATGTGGATATTTGGTTATTGATAAAGACACTTCAGATCTGCATGATTCATTACAATGTTCACAGTGTGAACATAAATATCACGAGAAATGCCTGAAAGACAGAGAAAAACAAGGAGCAGTTTCAGACATTTGGTTTTGTGATCAGAGTTGTCAGGAGGTGTACTCTGGACTCCAATCTCAGGTGGGGTTAGTTAATCAAGCTGCTGATGGCATCTCATGGACACTTCTTAGATGCATCCATGATGACCAAAAAGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACGAAGTTAGCAGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCAATGCTTGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCATGGTATTGGAGAAACATGATGTGTTAATATCTGTAGCATCTATCAGGGTGCATGGAACTACAGTAGCGGAGATGCCTCTAATTGCTACTTGCAGTCAGTATCGTCGCCAGGGAATGTGCCGTCTCCTTGTGAGTGCTATTGAACAGATGTTAACATCTTTCAAGGTGGAAAGGCTTGTTGTATCAGCCATTCCTGATTTGGTCGAGACATGGACAAAGGGCTTTGGATTCAAACCCGTTGCTGATGTTGAAAGGCAAAGATTGAATAAGTTTAACTTCATGATCTTTCCTGGGACAGTTTTTCTTGAGAAACGGTTACATAAGAAGATGAAAAATGAAGGACTGTGTGATGAATCAACTCAAGCAACAGATGAATCCGTCAAAGTAGGTATCTGTCCTGAAGAAATGACCAATACTGAATCATTACTACAAGATGTTGCAGACGTAACTACTACCAACCAAGTTGAAGCAAAGTCAGAACATGAACCTGTGGATTGTAAAAATCAGTCGGACTATAAAGCTAGCAGTGATAACAATATGAGGGAATTGAGAACATGCAACAAAGTGGAAATGGCAAGTGATTCAGTACAACAATCTATTGAGAAAGTACAACAATCTAATGAGAATTTTTCTGCTATCAAAGATGATGCTGAACCAGGTACAAGGATTGTTGAGGACAAGAATATCAAAATAGGTGAGGGTCAGGAAAATGTTTTGCAGGGTCATTTTTCAAATCTATCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAGTATTGAATGCTCAGTCATGTATGATGAAACAGCTTTTTTTGGAACATTTGCAAAGTCTGCGAGCTGA 3801 0.4025 MFISNEVEDLFDDNFEGSNEERQIFSEVFSGNDIFQSSLKCSVPGAVSFEHESAKKTFKSFCSSNENSVALHPLASRLSHPEEENFNVIKPSKEAATGYVPESFICEDQNDEDVNVKRMKFSLHELACSRSDSEKNLSSSQLSKVAVSNLSCAATGCDSEPIAFRLVESSKHGVISSCYLLNHNKLNKQAVKEDVNVTNFNTTADGTIAKEMSVSKAAASPVSQESFASRLVVTSPSITVVKKSGSPLNPEEMPESTNVDISKQEEDPRTILQFQIVQLLTLAGWSIEKRQRPSRRYPESVYRTPEGKPIREFTKAWRICGELLSVEKCNLVCRACKEWTDISQFWSDLSSALINVEKTKIQSEDPAAILAYRWWLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSSKYKMACASIDSSSRNLNQVPGGSNVNAVHQAKIRNYSGLKKHSSENYLGTTKFIDGDVPMDMSEENNASGVSYGLVHSHDSRAMQQSECSEEEGGKILVDSAFEKDNTYSAFNVTLRKKMRRKCKRVSEIKLSMFYHGDTPGSTVTDQVQSLDGEACGLEEVQNYLVDNAGKKRSSRKLPSISAVQRNIRKTNYSITGTDRSNSCQIKDDDLLVSAIFRNKDFGPKAIWGNSSAKSCKSRGQRKLKSQKGRCRLLPRNPCNGGKYNKDCHRFYLGARTILSWLIDNGVISLNDVIQYRNAKDNVVIKDGRITKDGIICTCCGKVLTLSEFKLHAGFTFNRPCMNIFMESGEPFTLCLLQAWSAEYKARKSLNQAVHADDNDKNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGDWYCANCTCRICGYLVIDKDTSDLHDSLQCSQCEHKYHEKCLKDREKQGAVSDIWFCDQSCQEVYSGLQSQVGLVNQAADGISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDPRTGIHMIPQVLYNWGSEFARLNFQGFYTMVLEKHDVLISVASIRVHGTTVAEMPLIATCSQYRRQGMCRLLVSAIEQMLTSFKVERLVVSAIPDLVETWTKGFGFKPVADVERQRLNKFNFMIFPGTVFLEKRLHKKMKNEGLCDESTQATDESVKVGICPEEMTNTESLLQDVADVTTTNQVEAKSEHEPVDCKNQSDYKASSDNNMRELRTCNKVEMASDSVQQSIEKVQQSNENFSAIKDDAEPGTRIVEDKNIKIGEGQENVLQGHFSNLSCKTFLGSNFDTDSSIECSVMYDETAFFGTFAKSAS 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01312 1266 CDD PHD_SF 835 886 - -
Spst5g01312 1266 MobiDBLite consensus disorder prediction 1139 1158 - -
Spst5g01312 1266 Pfam PHD-finger 795 836 IPR019787 -
Spst5g01312 1266 PANTHER PHD FINGER FAMILY PROTEIN 1 1190 - -
Spst5g01312 1266 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 944 1083 IPR000182 GO:0016747
Spst5g01312 1266 Gene3D - 939 1074 - -
Spst5g01312 1266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 852 IPR013083 -
Spst5g01312 1266 CDD PHD2_CHD_II 794 834 - -
Spst5g01312 1266 ProSiteProfiles Zinc finger PHD-type profile. 792 837 IPR019787 -
Spst5g01312 1266 SMART PHD_3 836 889 IPR001965 -
Spst5g01312 1266 SMART PHD_3 794 835 IPR001965 -
Spst5g01312 1266 Pfam Tify domain binding domain 717 767 IPR032308 -
Spst5g01312 1266 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 943 1066 IPR016181 -
Spst5g01312 1266 SUPERFAMILY FYVE/PHD zinc finger 779 835 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01312 Spst-Chr5 26969283 26976910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01312 1 1100 PHD Transcription Factor Family AT3G14980 40.478 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst5g01312 TDBD 4.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01312 - - gmx:100777440 2083.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01312 5 26969283 26976910 Spst5g01312 5 26969283 26976910 ECH