Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01201 ATGCGATCATCGCCGTCTTCATTGGGTTCGTCATCTCGATCGGGTTTGCGGCTTCGTAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGACGAGTACACTCGAAACCATGGTGAGCTGAATGAGGATAATGATGGTTTGGACGCTGATGCAGGGGTTCGTCGGAGCTCCCGGGTTCGCCGGGCCCCGGTGCTGCTCGACGCATCTCCCGCTCCGCCAAAGAAACGACGGAGGGTGGGGAAGGGTGGAATTGGTCGTGGTGGGGAGAGTCCTAAGAGTTCAGGGCGGGAAAATAGAGGTTCAGTTGGGGCTTGGAGTTCTAGGTTGAGATCAAGGGCTGGCAATGTTGGTTTCAGGGTAAAGGAGGAGAGGGAATCGCCAGGCGGGAAGAGGAAGTTTTTTGATGTTGTGGTGGGAAAGAGGGTTGATGCGAAGGAGGAGTTGGAAGGTTTAATGCCGAAAGTGGTTAAGTCGAAGAGACCGGGGAGGATTAAAGCCACAAAGCACGAGGAAGGGCATGAAGAGGATGTGTCCCATGGGAGTTTGGAGGAGAGTAAGAGTCAGGAAGTGCAGCTTGTGTCGAGCAGTGATGAGCAGAGTGATTCGGATTCTGAAACTGAATTGTCCGGAGAGGATCAGATGGATGACTCGGATGGAACTGCCCCTTCTATGGTAGGAAATGAGGATGGGGATCAGATGGATGATTCAGATGGGAATATTCCTCCCATGTTAGAGAATGAGAAGAGGAATTTATCCAACTATTTGCAAATGGAGGAGTGTGGTCATGACATTGAGTCTTCGTCTCAGGTGGAACATTTAGATAAAGTGGATTATCAGTTAGAGAGTGCGAAGGAAAGGACAAGTGTAGGTAATGCAGCTGAACACGTAGATAATGAAGGATCCCTTGGTAAGGAGGTTGACAATGATGAAAGTGTATTGAAAGATGCATTGAAAGATGCAAATATTGCTAAGGAGGTTGATGTCGAAGAAAATGTCTTGAAAGATGAAAATGCTTGGAGGAACGACGAGTTGAAGCATGCTTCAAATGACAAGCGTGGTCACCTGAGAATTAAAGAGGGTAGGCGGTGTGGTTTGTGTGGTGGAGGGAGCGATGGTAAGCCACCAAAAAGGTTAGCTCAGGATAATGGTGAAAGTGAGAATGAAGCTTATTGTGGGTCGTCATCTTCAGAGGAGACTAATTATGATATTTGGGATGGTTTTGATGATGAACCTGGTTGGCTTGGGCGCCTCTTGGGTCCTATTAATGATCACCATGGTATTGCTAGAATATGGGTTCATCTACACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCCAACTTTGGGTGCTTAAAAAATGTGAGGGCTGCACTATTCCGAGGAAGGGCATTGAAGTGCACACGCTGTGGGAGACGAGGGGCAACCACTGGTTGTCGTGTTGATCGTTGTCCAAGAACTTATCACTTGCCTTGTGCCAGAGCCAGTGGTTGCATCTTTGATCATCGTAAATTTCTCATAGCCTGCACAGATCATCGGCATCTCTTCCAACCTCATGGTAGTAAATATTTAGCCAGAATAAAGAAGTTGAAGGCTAGGAAAATGATGTGGGAAATAAGGAAACGATCAAACGAAGCTTGCAAAAAAGATATTGGAGATGAAGAAAGATGGTTGGAAAATTGTGGAGAGGATGAAGAATTTTTGAAACGTGAGAACAAAAGGCTTCATCGTGATTTATTGAGAATAGCTCCAGTGTACATTGGGGGTTCAGACTCTGCCAAAGAAAATTCATTTCAGGGTTGGGAATCTGTTGCTGGGCTCAAAGATGTCATCAGATGTATGAAAGAAGTTGTCATTTTACCTCTGTTATATCCTGAGCTCTTTGATAATTTAGGGCTTACACCTCCAAGAGGTGTTCTTTTGCATGGGCATCCCGGAACGGGGAAAACCTTAGTTGTCCGGGCATTGATAGGAGCATGTGCCCGAGGTGATAAAAGGATTGCATATTTTGCCCGGAAAGGTGCAGATTGCTTGGGAAAGTATGTTGGTGATGCTGAGCGACAACTAAGACTGTTATTTCAGGTTGCCGAGAAATGTCAACCTTCTATAATATTCTTCGATGAAATAGATGGTCTGGCACCCGTCCGCACTAGGCAGCAAGATCAAACTCATAGTTCTGTTGTCTCAACATTGCTTGCTCTCATGGATGGTTTGAAATCTAGGGGTTCAGTTGTGGTCATAGGTGCGACCAACCGTCCTGAAGCTGTTGACCCAGCGCTTAGGCGCCCAGGTAGATTTGATCGGGAAATTTATTTTCCATTACCATCAATTGAAGACAGAGCTTCCATTCTCTCACTTCACACCCAAAAGTGGCCAAAACCAATTACTGGATCCTTGCTTGAGTGGATTGCAAGAAAAACACCAGGCTTTGCTGGTGCTGATCTCCAGGCACTTTGTACTCAAGCGGCTATTAATGCATTGAAGAGGAATTTCCCTTTGCAAGAAGTCTTGTCTTCAGCTGCTGAAGAAAAACATTCTGGTTCTAAGCACATTCCTCTTCCATCCTTTGCAGTGGAGGAGAGGGATTGGTTAGAGGCTGTTTTTTCTTCCCCACTTCCTTGCTCCCAAAGAGATGCTGGAAATGCTGCTAATGATGTAGTATGCTCCCCTCTTCCCATCCAACTTATTCCTTGTTTGTTGCAGCCATTATGCACTATTCTTGTATCTCTATATCTTGATGAACGTCTATGTTTACCACTTTCCATATCTAAAGCTGTAGCTGTGATAAAGGATGCTATGATTTCTGCTCTAGACAAAAGGAAAAAGCCTTTTGATTGCTGGTGGTTGCACATGGATAATTTTCTTCAAGAATCCCGTACTGTTTATGAGTTAAAGAGAAAGCTTACTTGTTCTGGCATTTTATCTGCGGATGATGGCATTACTTGTTCTAATAATACTGTGGATGATGCTAATGCTAACAACTTGAAGTTAGAATCCTCCACAAGGAACCATCTTGGCATGCGTGGTGGTTTATTTGCATTGACCAACAATTCAGGATTTCGGATATTAATTTCTGGAAATCCACGATCTGGCCAGAGACATCTTGCTTCTTGTCTTCTTCACTGCTTTATTGGAAATATTGAAATGCAGAAGATTGATATGGCAACTATTTTACAAGAAGGGCATGGAGAAGTGGTGCAGGGGATTGCCCAAATATTAATGAAATGTGCTAGCAGGCAATCTTGCTTAGTATTTTTGCCAAGAATTGATTTATGGGCTCTGGAGAAACATTTTCAAATTGCTGAAAGGTCTGATTCGTGTTTTACGATGGAAAAGTCTTGTTTCACACCAAACCAAGTTGTTGAGAAGGAAAGTGAGATCAGTACGGAGAAAAACTCAACTGAGATGACCAATGGCCAAGCCAACACGAAGGCTTCATTTGCTTGGATGTCGTTTATTGAGCAGGTGGAATCCATTAGTGTATCCACATCCTTGATGATTTTGGCTACTTCAGAAGTTCCCTATACAGAACTTCCCCGCAAAGTAAGAGAATTTTTCAAGAATTATCAATCTAAAGACAGTTTGGAGCAGACAGTTCCTCGATACACTGTGCAGATTGATGGGAATTTTGACCGTGACATGGTGATCAATCTATCTGTACTAGAGCTATTGAGAAATGTAGTTGAGCAAATGGTTCAATTGATTCATCAGAGATCTCATGTTCACATGGGTGGCCAAAAGGGCCCCACAACCTATGAATCGATTGAAGATTGTAAAGATAAGGTATGTCAAAGAAAAGAATATGGATCAGCCACTGATAAAAAGAGTCAAATCCAACTTGAGTCCTTTACAAAAGTTCCACCAACACCAAACAGCAAGTCACTAAAGGGAAAGTCAACCCTGTTGTTGGCAATATCTACACTTGGCTATCAAATTCTCGTGTACCCACATTTTGCTGAACTTTGTTGGGTCACTTCAAAACTCAAAGAAGGTCCTTGTGCTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCCTGTATAATTCGTCCTAATAATTCACAAGACAAGGTGTCTGTTTCTTGTAGTTCTGGTAGCATTAAAAGTAGAGAAGCATCTGGTCTAGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTATACATCAGTTAGGGAAGTTTCCCTTGATGTTAGGAGGGTTCTTGAGGTCTTAATTGAGAATATCAATACCAAAATTCAAGCTGGGAAAGATAGATACCAATATTTTCGTATTTTGTCACAAGTGGCTTATTTAGAAGATATGGTCAACAACTGGGCTTACTCGTTGCTAAGTCTGGAGCAGGATTCCCCTGAGCATACAACAAAGGTTACACCAGCAAGTGGTGGGTCGTTAAACACTAATCTCACATGTGAAAATCACCAATCTGAAGGCGAGGACTGCCATTTGGTTGTACCTAGATATGGTCATGATGTGGAGGCACTGGAGGAAAATCATAATGAAATTCCTTCTGAAACGACTGGATACCACACCTCTAATGATAAAAATGGTAATTTGAATGTTACTGATTGTGATAATGGAAATGCTAGCTCTGAAGGATCTCTACAGAACCATTCTTTATCTGATAAGCATATCAACAACTATGCTGCGGCTGCTGCAAACCAGCCACTTCATCCATCTACAAGTCAGGAGAATGGAACATTATTAGTAGCACATGAATCTCTAATTGCTGGAAATAACGAAGAGGTGCGTGGAGAACTAGGGATTTCAGATAATTTGAGCAAATCCATGGGCATTCCATTTGTGGTCCTTTCTGAAAATGGAGTTCACTCAGCTGTTGAACCAGAGACACAGATTGTTGAGATATTGAACTGTCCCGCCCCTGATCAGCCTCTTAGGTTGTCCTCGCCCTTGCAAGACATTGGCGCTAAATCAAGTGATGTTAAATCTGATAAACATGAGAATGCCACAGATAATAATGTGTCATCAAGTAATGTCAGTGCTCCTGCTGACTCGGGGGTTATTTGCTTGTATCAATGTTGCCCTGCTTGTCTCCACAGTCTCCATCTTTTGATAAAAAAAATACTTGTTGGAGATTGGGGGTTGAACAGTAACCAGTGGACTGTAGAAGATGCCCAAGATGCTGTTGCATCATTATCTGTGGATCTTATTTCAGCAGTTAGAAAAAGCTTTGTTGCTGAAGATTTCATTGATTCATCGAATAAAACCTCAAGGCATGAAAATCATGGAATATCTCTTGATTGTTTGAACCCGAGAATGTGTAATGCTGAAAACCAAGACAAGGATGCTGTGGCAGCTGAATGTGTTTCTCATTCTGCATGCCAACATGCAACTGCAGTGGAAGATACGGTACTGAATGAAGAATCAGCTATGGGTAATTTTAAATATGTTATTAGAGATGGTGTACTAGTTCATGTTGACCCTGACAAGGATGTCTCAGTTCACTGTAAATTTGAGAACCTGTGCCTTTGTTCTCTTAGAGAGTTGATATTAATGACAAAGCGCCCTTTCTTTTATTAG 5550 0.4285 MRSSPSSLGSSSRSGLRLRKKHKRLDAICEDEYTRNHGELNEDNDGLDADAGVRRSSRVRRAPVLLDASPAPPKKRRRVGKGGIGRGGESPKSSGRENRGSVGAWSSRLRSRAGNVGFRVKEERESPGGKRKFFDVVVGKRVDAKEELEGLMPKVVKSKRPGRIKATKHEEGHEEDVSHGSLEESKSQEVQLVSSSDEQSDSDSETELSGEDQMDDSDGTAPSMVGNEDGDQMDDSDGNIPPMLENEKRNLSNYLQMEECGHDIESSSQVEHLDKVDYQLESAKERTSVGNAAEHVDNEGSLGKEVDNDESVLKDALKDANIAKEVDVEENVLKDENAWRNDELKHASNDKRGHLRIKEGRRCGLCGGGSDGKPPKRLAQDNGESENEAYCGSSSSEETNYDIWDGFDDEPGWLGRLLGPINDHHGIARIWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPHGSKYLARIKKLKARKMMWEIRKRSNEACKKDIGDEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSAKENSFQGWESVAGLKDVIRCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPVRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSIEDRASILSLHTQKWPKPITGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSSAAEEKHSGSKHIPLPSFAVEERDWLEAVFSSPLPCSQRDAGNAANDVVCSPLPIQLIPCLLQPLCTILVSLYLDERLCLPLSISKAVAVIKDAMISALDKRKKPFDCWWLHMDNFLQESRTVYELKRKLTCSGILSADDGITCSNNTVDDANANNLKLESSTRNHLGMRGGLFALTNNSGFRILISGNPRSGQRHLASCLLHCFIGNIEMQKIDMATILQEGHGEVVQGIAQILMKCASRQSCLVFLPRIDLWALEKHFQIAERSDSCFTMEKSCFTPNQVVEKESEISTEKNSTEMTNGQANTKASFAWMSFIEQVESISVSTSLMILATSEVPYTELPRKVREFFKNYQSKDSLEQTVPRYTVQIDGNFDRDMVINLSVLELLRNVVEQMVQLIHQRSHVHMGGQKGPTTYESIEDCKDKVCQRKEYGSATDKKSQIQLESFTKVPPTPNSKSLKGKSTLLLAISTLGYQILVYPHFAELCWVTSKLKEGPCADVSGPWRGWPFNSCIIRPNNSQDKVSVSCSSGSIKSREASGLVRGLIAVGLSAYRGVYTSVREVSLDVRRVLEVLIENINTKIQAGKDRYQYFRILSQVAYLEDMVNNWAYSLLSLEQDSPEHTTKVTPASGGSLNTNLTCENHQSEGEDCHLVVPRYGHDVEALEENHNEIPSETTGYHTSNDKNGNLNVTDCDNGNASSEGSLQNHSLSDKHINNYAAAAANQPLHPSTSQENGTLLVAHESLIAGNNEEVRGELGISDNLSKSMGIPFVVLSENGVHSAVEPETQIVEILNCPAPDQPLRLSSPLQDIGAKSSDVKSDKHENATDNNVSSSNVSAPADSGVICLYQCCPACLHSLHLLIKKILVGDWGLNSNQWTVEDAQDAVASLSVDLISAVRKSFVAEDFIDSSNKTSRHENHGISLDCLNPRMCNAENQDKDAVAAECVSHSACQHATAVEDTVLNEESAMGNFKYVIRDGVLVHVDPDKDVSVHCKFENLCLCSLRELILMTKRPFFY 1849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01201 1849 MobiDBLite consensus disorder prediction 1504 1542 - -
Spst5g01201 1849 PANTHER AAA DOMAIN-CONTAINING 13 1745 IPR045199 -
Spst5g01201 1849 MobiDBLite consensus disorder prediction 1 251 - -
Spst5g01201 1849 MobiDBLite consensus disorder prediction 184 199 - -
Spst5g01201 1849 FunFam ATPase family, AAA domain-containing 2 597 780 - -
Spst5g01201 1849 ProSitePatterns AAA-protein family signature. 743 761 IPR003960 GO:0005524|GO:0016887
Spst5g01201 1849 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 774 867 - -
Spst5g01201 1849 Gene3D - 774 835 - -
Spst5g01201 1849 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 830 IPR027417 -
Spst5g01201 1849 MobiDBLite consensus disorder prediction 200 214 - -
Spst5g01201 1849 MobiDBLite consensus disorder prediction 164 183 - -
Spst5g01201 1849 ProSiteProfiles Extended PHD (ePHD) domain profile. 400 512 IPR034732 -
Spst5g01201 1849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 514 IPR013083 -
Spst5g01201 1849 Gene3D - 599 773 IPR027417 -
Spst5g01201 1849 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 358 514 - -
Spst5g01201 1849 Pfam ATPase family associated with various cellular activities (AAA) 638 773 IPR003959 GO:0005524|GO:0016887
Spst5g01201 1849 SMART AAA_5 634 775 IPR003593 GO:0016887
Spst5g01201 1849 Pfam PHD-like zinc-binding domain 433 512 - -
Spst5g01201 1849 MobiDBLite consensus disorder prediction 115 156 - -
Spst5g01201 1849 Pfam AAA+ lid domain 799 831 IPR041569 -
Spst5g01201 1849 MobiDBLite consensus disorder prediction 1637 1669 - -
Spst5g01201 1849 MobiDBLite consensus disorder prediction 23 61 - -
Spst5g01201 1849 MobiDBLite consensus disorder prediction 366 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01201 Spst-Chr5 18600432 18607456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01201 600 835 Calmodulin-binding Proteins AT3G56690 40.756 2.19e-45 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01201 - - gmx:100803849 2878.97