Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01200 ATGAAGGGGTGGCAAAGTTGGAAAAGTGTAAACTCATGGAGCCAATTGACAACTCTTGCGAGTCTTCTTTTTGCAAAAGACGAAAAAATAGAAACTGCTGATCTGCTGGGGGAATGCTGGTTCTTTGATAACTTGTTGAAGATAACTCCAAGGATGACAAGGTGTTACTCTGATCCTTACCCTTCCACCAGTCTAATTAGCCCCCCAGATTTTTGGTTGAAGAACTCTGATGTGTCTTCATACTCGTCACGAAGTAAACCACCAAATAATGGTGCTTTAGTTCATCCAAAGAAGATCCAAAGAGCACCATCCATGCCACCATTGAGATTGGAAAGAAATTGGTGTACCAAACAACAGATCCTGTGGAGTCTCGCTCAGCCAGTAAATAGTGCACAGATGAAAGGACATCATAACAAACCCGAGTGGTTGAGGTGTTCTTTTACATGGGCATCTGGAGCAGGGAAAACCTTAGTTGTCCAGTCATTGATAAAAGGATTGCATACTTATGTTGTCTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCTAGGGGTTCAGTTGTGATTACAGGTGCCACTAACCGTCCTGAATCTGTTGACCCAGCGCTTAAGCTCCCTGGTAGATTTGACCGGCTTTGTACTCAAGCGGCTATTAATGCGGCTCCTTGTTCCATGTTTGTTACATACAGCCATTATGCACTCTTCTTGTATCTCTATATCTTGCTGATCGTCTACACAAAAGGAAAAAGCCTTTTGATCGCCGGTGGTTGCACATGGATGATTTTCTTCAAGAATTCAATACTGTTTGAGTTAAAGAGAAAAACTTGTTCGGGCATTTTATCTGCGGATGATGTCATTATTTGTTCTAACGATACTGTGGATGATGCTAATGATAACAACTTGAAGTTGGTAAGTCTGGAGCACGATTCCTGTGAGCATACAACAAAGGTTACACCAGCAAGTGGTGGGTCGTTAAACACTAATCTCACATGTGAAAATCACCAATCTGAAGGCGAGGACTGCCGTTTTCTTGTACCTAGAGATGGTCATGATTTGGAGACATTGAAGGAAAATCATAATGAAATTCCTTCTGAAACGACTGGATACCTCACCTCTAATGACAAAAATGTGTGTGGAGAACTAGGGGTTTCAAATAATTTGAGCAAATCCATGGGCACTCAATCTGTCGTCCTTTCTGAAAATGGACTTCACACAGCTGTCGAACCAGAGACACAGAATGTTGAGATTTGTAACTTTCCCGACTCTGATCAGCCTTTAGGTTGTCCTCGCCCTCGCAAGATATTGGCGCTAAATCAAGTCCCAGTTGACTCTGGGGTTATTTGCTTGTATCAATGTTGCCCTGCATGTCTCCACAGTCTCCATCTTCTGATGAAGAAAACTGTTAGGTTTTGTTAA 1416 0.4216 MKGWQSWKSVNSWSQLTTLASLLFAKDEKIETADLLGECWFFDNLLKITPRMTRCYSDPYPSTSLISPPDFWLKNSDVSSYSSRSKPPNNGALVHPKKIQRAPSMPPLRLERNWCTKQQILWSLAQPVNSAQMKGHHNKPEWLRCSFTWASGAGKTLVVQSLIKGLHTYVVSTLLALMDGLKSRGSVVITGATNRPESVDPALKLPGRFDRLCTQAAINAAPCSMFVTYSHYALFLYLYILLIVYTKGKSLLIAGGCTWMIFFKNSILFELKRKTCSGILSADDVIICSNDTVDDANDNNLKLVSLEHDSCEHTTKVTPASGGSLNTNLTCENHQSEGEDCRFLVPRDGHDLETLKENHNEIPSETTGYLTSNDKNVCGELGVSNNLSKSMGTQSVVLSENGLHTAVEPETQNVEICNFPDSDQPLGCPRPRKILALNQVPVDSGVICLYQCCPACLHSLHLLMKKTVRFC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01200 471 Gene3D - 164 214 IPR027417 -
Spst5g01200 471 Pfam ATPase family associated with various cellular activities (AAA) 168 211 IPR003959 GO:0005524|GO:0016887
Spst5g01200 471 PANTHER AAA DOMAIN-CONTAINING 167 211 IPR045199 -
Spst5g01200 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 212 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01200 Spst-Chr5 18595729 18599616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01200 170 212 Calmodulin-binding Proteins AT3G56690 55.814 1.53e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01200 - - vra:106760983 152.91