Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01170 ATGGACTCCTCCTACCACCACTTGGACCACACTGAAGCTCACCTGCCACCTGGGTTTAGGTTCCACCCCACTGATGAGGAACTCATAACGTACTACCTTCTAAAGAAAGTTTTAGACAGCAGCTTTACTGGTAGAGCCATAGCGGAAGTTGACCTGAACAAGAGTGAACCATGGGAGCTCCCAGCGAAAGCTAAAATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTGCGTGACAGGAAGTACCCAACTGGGTTACGGACCAATAGGGCCACTGAAGCTGGTTACTGGAAAGCCACTGGGAAGGATAGAGAGATTTACAGCTCCAAGACTTGCTCTTTGGTGGGGATGAAGAAAACCTTGGTTTTCTACCGTGGTAGAGCCCCCAAGGGGGAGAAAAGTAACTGGGTCATGCATGAGTATCGCCTTGAGGGAAAATTTGCTTACCATTACCTTTCCCGCAACTCCAAGGACGAATGGGTTATCTCACGCGTGTTCAAGAAGAGCAACACAACCAACGGATGCTCCACCATGTCTGCTTCGAGTGGCTCCAAAAAAACAAGAGTGAGTACCATCAACACCTCTCTCTGCCCGGAACCAAGTTCACCCTCTTCGGTTTACCTACCACCTCTTCTAGACTCATCTCCCTACACCACAGTTAACTTCAACGACCGCAATAATTGTTCCTATGACAGCACCACCAAGAAGGAGCACGTGTCCTGTTTCTCCACAATCGCTGCAGCCAACGCTGCTGTCGTCTCCCCAAACAACTTCACCAATGCTAGCTTCGACCTTCCACCTTCCCAGCCTCTTGCATCGGACCCCTTTGCTCGGTTTCAGAGAAACGTTGGTGTCTCTGCCTTCCCAAGTTTAAGGTCACTGCAAGACAACCTTCAGCTGCCGTTCTTTTTCCCCCCGGTGGCACAGCCCTTCCCTGGCGTTGGTTCCGGTGACTTCCTTTGGTCGATGCCGGAGGAACAAAGGTTGGTTGATGCCGCCTCCAACATGCCACTGGGGGTGTCGGAGCTTGATTGCATGTGGGGCTACTAG 1047 0.5129 MDSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIAEVDLNKSEPWELPAKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFKKSNTTNGCSTMSASSGSKKTRVSTINTSLCPEPSSPSSVYLPPLLDSSPYTTVNFNDRNNCSYDSTTKKEHVSCFSTIAAANAAVVSPNNFTNASFDLPPSQPLASDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFPPVAQPFPGVGSGDFLWSMPEEQRLVDAASNMPLGVSELDCMWGY 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01170 348 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Spst5g01170 348 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Spst5g01170 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 225 - -
Spst5g01170 348 FunFam NAC domain-containing protein 100-like 24 171 - -
Spst5g01170 348 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Spst5g01170 348 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01170 Spst-Chr5 15794779 15796576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01170 1 348 NAC Transcription Factor Family AT5G53950 56.186 2.05e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g01170 NAM 2.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01170 - - vun:114185732 643.654