Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01142 ATGGAGATCACGAGTAGAGATAGGAGGCAAGTTGCAATTGAGAAGGTGAGGAGAGACAGCACAGTTGAAGTAGAATATGAGGACGAGGAGGAGGATGAAAGTGTGGCTGGTGGAGACGGCTGTCTTGCAGAAGATGAGAGGAAGAAGGGTGGTGGAGGTGGTGGGAGAAGAGGGTCAAGTGGGGGTGGAATTTCTCCACCTTCTTGTCAGGCGGAGATGTGTGGTGCTGATTTAACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGGTTCATTCCAAGGCAGCTTTTGTGATGATTGCAGGAATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGAAGAGTTTGACGAAGCTAAAAGAAGCTGCCGGAGACGCTTGGCCAGACACAACGAGCGGCGCCGGAAAAGCAATGCTGAAACTTGCAACGAAGGATGCAGCGGCAGCAAAGGGCAGCACCATACAGAAAGCCTCTGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACTTGGGAAGGAATTCTGGTTACAGGTCCTTCCATTTCAGATGA 573 0.5061 MEITSRDRRQVAIEKVRRDSTVEVEYEDEEEDESVAGGDGCLAEDERKKGGGGGGRRGSSGGGISPPSCQAEMCGADLTVAKRYHRRHKVCEVHSKAAFVMIAGMRQRFCQQCSRFHELEEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSKGQHHTESLCRNADDWGRIQMNLGRNSGYRSFHFR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01142 190 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
Spst5g01142 190 Coils Coil 119 139 - -
Spst5g01142 190 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
Spst5g01142 190 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Spst5g01142 190 MobiDBLite consensus disorder prediction 19 66 - -
Spst5g01142 190 MobiDBLite consensus disorder prediction 24 39 - -
Spst5g01142 190 Pfam SBP domain 69 142 IPR004333 GO:0003677
Spst5g01142 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 47 146 IPR044817 GO:0003677
Spst5g01142 190 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01142 Spst-Chr5 13674943 13675924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01142 1 158 SBP-box Gene Family AT3G60030 48.810 9.06e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst5g01142 SBP 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01142 - - gmx:100305703 283.878