Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01140 ATGGTGGGCTCAGGAGCATCAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAAAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCGAGAGTTCGAGGTAGTAATGGCTGCAAGGTTGGAGATGACAACGGTAGCTTGATGTTGATGTGGGAAGATGGTTTCTGCCGAGGGAATATTGATGGAGAGGATCCTGTGAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTCTTTAAAGAGCCCACAGAATGTGAACCGAATATCTCCAACTATTGGCAGAGCTCCTTTGATGCTCTTCCTCCTGAGTGGACAGACCAGTTTGAGTCAGGCATTCAGACCATAGCTGTAATTCAAGCTGGGCATGGCCTTCTCCAACTTGGTTCTTGCAAGATTATACCTGAAGACCTCCATTTTGTGCTTAGAATGAGACACACTTTTGAGTCCCTTGGCTACCAATCTGGTTTCTATCTCTCCCAACTCTTCTCTTCAACAAGGAACTCTTCCTCTTCTACTTCTGTTCCTTCAAAACCATCTACCATTCCAATTAGGCCACCTCCACTCTTCAACTGGGGTCAGAGACCACTTACTTCTGCCACCTCCATGTTATCCTCACCGAATTTTCAACAACATGCAGCTAGGCTTGGGTTCCCTAAAGATGAGGCGAACATGTTTCTCATTCCTCATGCATCATCTGAGAGTGCAAGAATAGAGGACATAATGGGGGAGCATGAAAACGACATAAAATGGCCCAATGGCTTGTCTTTCTTCAATGCTCTCACTGGAAGAACAGATGATGCTAAGCTTTTGTTCAATCCTGATACCTTGGGGAGCAAACCAGGCGATCAAAGTCAGCATCACCCCCTTAGTCAAAATCCCAATTCAGAGGCCTCCAATATGCAAAATGCTAGTGCAACCAACCCAAATGAGTTCTTGAGCTTGGATAATCACCAAGATGATGCAAGGAAAATGGACAAGTTCAAGAGGAGCTTCACTCTACCTGCAAGAGTGCCCTCATCATCTTCATCCACCTCAATGGATCACCACCATCAACAAGGTGTGGAGTATAGGAATTCAGAAGGAGGTATGTACCCGGATGTCATGGAAACATTTTTGGAGTGA 1221 0.4595 MVGSGASDRSKEAVGMMALHEALKRVCLNSDWTYSVFWTIRPRPRVRGSNGCKVGDDNGSLMLMWEDGFCRGNIDGEDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNSSSSTSVPSKPSTIPIRPPPLFNWGQRPLTSATSMLSSPNFQQHAARLGFPKDEANMFLIPHASSESARIEDIMGEHENDIKWPNGLSFFNALTGRTDDAKLLFNPDTLGSKPGDQSQHHPLSQNPNSEASNMQNASATNPNEFLSLDNHQDDARKMDKFKRSFTLPARVPSSSSSTSMDHHHQQGVEYRNSEGGMYPDVMETFLE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01140 406 MobiDBLite consensus disorder prediction 304 347 - -
Spst5g01140 406 MobiDBLite consensus disorder prediction 367 395 - -
Spst5g01140 406 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 81 180 IPR025610 -
Spst5g01140 406 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 75 IPR025610 -
Spst5g01140 406 PANTHER GB|AAF34833.1 1 406 IPR044170 -
Spst5g01140 406 MobiDBLite consensus disorder prediction 310 347 - -
Spst5g01140 406 MobiDBLite consensus disorder prediction 367 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01140 Spst-Chr5 13623317 13625389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01140 20 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 36.095 3.09e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01140 - - gmx:100814723 741.495