Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01106 ATGGCCACCTCTGACTCTGTCCTGGACTCACATGTCTCACTCATGCACTATTCCTCCACTGAAGATGACCAAGACGACGATGACGACGAGGATGAGGAAGACACAAACCTCGATTTCTACGACACCAATGTCGACTCCGAAGACGAGTACAAGAAGCCCGACACCTTTTCCGGCAGCAGTTTCCGGCGGGATTTCGGGGTGGTGCTGGACCCGCGAGCCAAGTGGGTCCAAGAATGGAACAGGGTGTTCCTCCTGGTGTGTGCCACTGGACTTTTCGTCGACCCTCTGTTCTTCTACGCGCTCTCCATAAGCGACACGTGTATGTGCCTCTTCCTCGACGGCTGGCTCGTGGTCACCGTCACCGTGCTCCGGTGCATGACCGACGCGTTGCATGTGTGGAACATGTGGCTCCAATTCAAGATGACTAAACGCTCTTCTTTTCTTGCCAGAGACGTATACGCCTCGCGCGGTGGTAGATGTGCTCTTCGCTACCTCAAGGCTAAGAGGGGTTTCTTCTTCGACATCTTCGTCATCCTCCCCATTCCCCAGATTGTGCTATGGATGGCAATTCCCTCTCTGTTGGAGAGAGGATCAATTACGTTGGTGATGACAGTGTTCTTAATCGTCTTCCTCTTTCAATACCTTCCCAAAATTTATCACTCAGTTTGCCTCTTGCGTCGCATGCAAAACCTCTCTGGCTACATTTTTGGAACCGTTTGGTGGGGTATCGCCCTCAACCTCATAGCATATTTTGTAGCTTCCCATGCAGCAGGGGCATGCTGGTACATGTTAGGGTTGCAAAGGGCAACAAAGTGCTTGGAAGAACAGTGTGCAAAAACAGCTGGTTGTGGCTTGAGAACACTGTGCTGCAAAGTGCCTATATACTATGGAGGCACTAGCATCGTAAGGGACAAAACCAGACTGGGATGGGCTGAAAACAGGGAAGCAAGGTCTACTTGTTTGGACAGTGCTGATAACTACGACTATGGTGCATACGCATGGTCTGTTCAACTCGTCACAAATGATAGCAGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTCGGGAACCTAGAGAGCACAACGGAGAGGCTAGAAGTGTTTTTGCATGCGACAACGTCAAAGAAGCAAGCAATGATACTGAGAATGAGGAACATTGAATGGTGGATGAGCAAAAGGAGGTTGCCACAAGGGTTCAGGCAGCGCGTGAGGAACTATGAGAGGCAGCGTTGGGCTGCGATGCGAGGGGTTGATGAATGCCAGATGATAAAGAATCTCCCTGAGGGACTAAGAAGGGACATCAAGTACCATCTCTGTTTGGATTTGGTCAGACAGGTGCCACTGTTTCAGCACATGGATGATTTGGTGCTAGAGAACATCTGTGACCGTGTGACGTCCCTTGTATTCACAAAAGGAGAAACAATAAGCAGAGAGGGAGACCCAGTTCAAAGAATGTTGTTCGTGGTAAGGGGACACCTTCAGAGCAGCCAAGTCCTGCGAGACGGGGTGAAAAGTTACTGCATGTTAGGGCCTGGGAACTTCAGCGGCGACGAGCTTCTTTCGTGGTGTTTGAGAAGGCCATTCATAGAGCGTCTTCCACCATCTTCAAGCACTTTGGTGACACTTGAAGCGACGGAGGCATTTGGGTTGGAAGCAAAGGACGTGAAATACGTGACACAGCACTTCAGGTACACATTTGTGAAGGAAAAAGTTAAGAGAAGTGCTAGGTATTACTCCCCAGGGTGGAGAACTTGGGCTGCGGTGGCCATTCAATTGGCTTGGAGAAGGTATAGGCACCGTTTGGGGTTGAATTGTTTGTCCTTCATAAGGCCTCGCAGACCTGCCTCGAGGTGCAGTTCCATGGAAGAGGATAGGCTTCGTCTGTACACGGCTTTGTTAACTTCACCCAAGCCTAATCAGGATGACTTTGACTTCTGA 1959 0.4992 MATSDSVLDSHVSLMHYSSTEDDQDDDDDEDEEDTNLDFYDTNVDSEDEYKKPDTFSGSSFRRDFGVVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISDTCMCLFLDGWLVVTVTVLRCMTDALHVWNMWLQFKMTKRSSFLARDVYASRGGRCALRYLKAKRGFFFDIFVILPIPQIVLWMAIPSLLERGSITLVMTVFLIVFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNLIAYFVASHAAGACWYMLGLQRATKCLEEQCAKTAGCGLRTLCCKVPIYYGGTSIVRDKTRLGWAENREARSTCLDSADNYDYGAYAWSVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTERLEVFLHATTSKKQAMILRMRNIEWWMSKRRLPQGFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVTSLVFTKGETISREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLEATEAFGLEAKDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLGLNCLSFIRPRRPASRCSSMEEDRLRLYTALLTSPKPNQDDFDF 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01106 652 FunFam Cyclic nucleotide-gated ion channel 1 382 446 - -
Spst5g01106 652 Gene3D Helix hairpin bin 380 446 - -
Spst5g01106 652 CDD CAP_ED 455 561 IPR000595 -
Spst5g01106 652 SUPERFAMILY Voltage-gated potassium channels 71 363 - -
Spst5g01106 652 SMART cnmp_10 455 584 IPR000595 -
Spst5g01106 652 MobiDBLite consensus disorder prediction 16 41 - -
Spst5g01106 652 SUPERFAMILY cAMP-binding domain-like 381 569 IPR018490 -
Spst5g01106 652 Pfam Ion transport protein 79 349 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst5g01106 652 FunFam cyclic nucleotide-gated ion channel 4 453 571 - -
Spst5g01106 652 Pfam Cyclic nucleotide-binding domain 475 563 IPR000595 -
Spst5g01106 652 Gene3D Jelly Rolls 453 571 IPR014710 -
Spst5g01106 652 ProSiteProfiles cAMP/cGMP binding motif profile. 455 565 IPR000595 -
Spst5g01106 652 MobiDBLite consensus disorder prediction 21 41 - -
Spst5g01106 652 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 55 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01106 Spst-Chr5 12477207 12490035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01106 65 651 Ion Channels AT5G54250 74.110 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01106 K05391 - gmx:100800795 1125.54