Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01102 ATGGCAGCAACATTGATGGCAGCTACAACAACTTCTGGCTCTGTTCTTAAACCAACTCCTTTCCTAGGCCAAGGCAAGGGTGCCAGTGCCAACCCTCTTAGGGATGTTGTCTCCATGGGAACCGGGAAGTACACCATGAGCAATGAGTTGTGGTATGGACCAGACAGAGTGAAATACTTGGGACCCTTTTCAGCTCAGACTCCTTCATACTTGAAGGGAGAATTTCCAGGTGATTATGGATGGGACACTGCTGGCTTATCTGCTGACCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTCATCCATGGGCGTTGGGCCATGCTTGGAGCACTGGGCTGCATCACCCCAGAGGTGCTGCAGAAGTGGTTGAGAGTGGAATTCAAGGAGCCAGTGTGGTTCAAAGCTGGGGCCCAGATATTCTCCGAAGGTGGGCTTGATTATTTGGGGAACCCAAACCTTGTCCATGCCCAAAGCATCTTGGCAGTGCTGGGCTTCCAAGTTGTTCTGATGGGCCTTGTTGAAGGGTTCCGCATCAATGGGCTTGACGGAGTTGGAGAGGGCAACAACCTCTACCCTGGGGGCCAGTACTTTGACCCATTGGGCCTTGCGGATGACCCAGTCACTTTTGCTGAGCTCAAAGTGAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCTATGTTTGGGTTCTTTGTTCAAGCCATTGTAACTGGAAAAGGTCCATTGGAGAACCTCTTGGACCACCTTGATAACCCTGTGGCTAACAATGCTTGGGTCTATGCCACCAAGTTTGCTCCTGGATCTTAA 810 0.5086 MAATLMAATTTSGSVLKPTPFLGQGKGASANPLRDVVSMGTGKYTMSNELWYGPDRVKYLGPFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLRVEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01102 269 SUPERFAMILY Chlorophyll a-b binding protein 50 266 - -
Spst5g01102 269 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Spst5g01102 269 Gene3D Chlorophyll a/b binding protein domain 58 262 - -
Spst5g01102 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 18 268 IPR001344 GO:0009765|GO:0016020
Spst5g01102 269 FunFam Chlorophyll a-b binding protein, chloroplastic 58 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01102 Spst-Chr5 12345044 12346235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01102 14 268 Chloroplast and Mitochondria Gene Families AT2G05070 67.803 7.71e-121 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01102 K08914 - gmx:100779387 525.013