Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01100 ATGATGTTATCAGCTTCGATGTCTGCTCTAACGAGGAGTTCGCTGGAGGAGATGCTTGAGTCGCTTCGCAAGAGAGACGAGGAGGAGAGGCCGAAGGACTTGCCGCCGGCATTGCCGTCGCGGCCGCAGTCGAGGGCGCGGTTGCCGTCGGCAAGGAGGATGTTGCCTAATAGCTTCAAGGTTGATGGCGAGAATAATGTGATGGGGCACAGAAGGAAGGGTAGTTTTGGGTGCAAGAAGGTCAAGTTGCATGTGGAATCCCCTTATGAAGTCATAGAAGAGAAAGTGAGTGAACAATCACCACCGTGTGTGGTTCCGACAGTCAATGATTCTTCTACTGATTGTGAAGCTCCTCCTCAGTCTGAGGAGTTGGAGGATGATAATGTTGCTTATTTCATCAAAAAGAAACTTCACGTTTGGTGTAAGCAACCAAAAGGGCAGTGGGAGCTTGGAACGATACAGTCAACATCTGGAGAGGAAGCATCTGTTTCTCTCTCAAATGGAAATGTTATGAAAGTAGCCAGGTCAGAGCTCCTACCAGCTAATCCTGATATTTTAGAGGGTATTGAAGATCTTATACAGCTCAGTTATTTGAATGAGCCTTCAGTTCTTCACAATCTTCAGTATAGATATACTCAGGATATGATTTATGTAGGTCTGCTGCTTTGGCTTGTTTTTCCTACGCAGAGTAAAGCAGGGCCCATTTTAATTGCACTCAATCCTTTTAAAGATGTCAAAGTTTATGGAAATGATTATGTCTCAGCTTATAGGCAGAAACTTTTGGATAGTCCTCATGTTTATGCTTTGGCAGATGCAGCTTATAATGAGATGATGAATGATGAAGCAAATCAGTCTATTATCATAAGTGGTGAAAGTGGAGCTGGGAAAACAGAGACTGCCAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGGCGGTTGTTCTGGAATAGAAGATGAAATCCTTCAGACAAATTTTATACTAGAAGCTTTTGGGAATGCAAAAACATCTAGGAATGATAACTCTAGCAGATTTGGGAAGTTGATTGAAATTCATTTTAGCGCAATGGGGAAAATTTGTGGGGCAGTAGTTCAAACTTTTCTGTTAGAAAAGTCAAGAGTTGTTCAACTTGCCTTGGACGAGAGGTCATATCATATATTTTATCAACTTTGTGCTGGATCTTCACGTGATCTTAAAGAAAGACTGAATCTAAGGACGGCTAGCGAATATAAATATCTTAACCAGAGTGACTGCATAACAATCGATGGTGTGAATGATGCTAAAAAATTTAATAGGCTGATGAAAGCATTGGATGTTATTCGAATGAGCAAAGAGGATCAAGAGCTAGTTTTTAAGATGCTGGCTGCGATATTATGGTTGGGAAATATATCATTCAAAGTTACTGATAATGAAAATCACATTGAGGTGGTGAATGATGAAGGTAACGGTGAAGGTGTTCCATGTGGCCAGCAATATGGTCTAAAAGTCTATATAACACTGAGCTATCCTCCTCCCTTGATTCATTTTGTGTATGACTAA 1539 0.4126 MMLSASMSALTRSSLEEMLESLRKRDEEERPKDLPPALPSRPQSRARLPSARRMLPNSFKVDGENNVMGHRRKGSFGCKKVKLHVESPYEVIEEKVSEQSPPCVVPTVNDSSTDCEAPPQSEELEDDNVAYFIKKKLHVWCKQPKGQWELGTIQSTSGEEASVSLSNGNVMKVARSELLPANPDILEGIEDLIQLSYLNEPSVLHNLQYRYTQDMIYVGLLLWLVFPTQSKAGPILIALNPFKDVKVYGNDYVSAYRQKLLDSPHVYALADAAYNEMMNDEANQSIIISGESGAGKTETAKIAMQYLAALGGGCSGIEDEILQTNFILEAFGNAKTSRNDNSSRFGKLIEIHFSAMGKICGAVVQTFLLEKSRVVQLALDERSYHIFYQLCAGSSRDLKERLNLRTASEYKYLNQSDCITIDGVNDAKKFNRLMKALDVIRMSKEDQELVFKMLAAILWLGNISFKVTDNENHIEVVNDEGNGEGVPCGQQYGLKVYITLSYPPPLIHFVYD 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01100 512 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 134 183 IPR004009 GO:0003774|GO:0005524|GO:0016459
Spst5g01100 512 PANTHER MYOSIN 180 480 - -
Spst5g01100 512 MobiDBLite consensus disorder prediction 1 15 - -
Spst5g01100 512 Gene3D Kinesin motor domain 186 381 IPR036961 -
Spst5g01100 512 MobiDBLite consensus disorder prediction 102 118 - -
Spst5g01100 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 480 IPR027417 -
Spst5g01100 512 FunFam Myosin heavy chain 382 438 - -
Spst5g01100 512 ProSiteProfiles Myosin motor domain profile. 187 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst5g01100 512 Gene3D - 382 438 - -
Spst5g01100 512 MobiDBLite consensus disorder prediction 17 35 - -
Spst5g01100 512 PRINTS Myosin heavy chain signature 283 308 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst5g01100 512 PRINTS Myosin heavy chain signature 326 353 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst5g01100 512 PRINTS Myosin heavy chain signature 229 248 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst5g01100 512 SMART MYSc_2a 181 509 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst5g01100 512 MobiDBLite consensus disorder prediction 101 121 - -
Spst5g01100 512 MobiDBLite consensus disorder prediction 1 55 - -
Spst5g01100 512 Gene3D Myosin VI head, motor domain, U50 subdomain 439 471 - -
Spst5g01100 512 Pfam Myosin head (motor domain) 190 475 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01100 Spst-Chr5 12333863 12337144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01100 1 481 Myosins gene family AT5G54280 61.840 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01100 K10357 - gmx:100819335 810.831