Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01078 ATGATTAACAATGGAGTTTACATTCTCCACACGAGCCTCTGTTTCCTAGAGAATCACCTGTTCCGACCATTGCCGTGCTCGTTTACTTTCCGGCGGCGGTTTCTGGTCACTGCATCAGAAACGAAGAAGAAAGAGAAGGTAGTTGTGATTTCTGGACCCACCGGTTCCGGCAAGAGCCGCCTAGCATTGGAACTCGCAAAGCGCCTCAACGGCGAAATCGTCAGTGCCGACTCCGTCCAGGTGTATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAAATGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATGTGAAGACTATTCTGTTGGGAAGTTTTTTGAGGATGCTAGGCAAGCTACTAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTCGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCTTCTCCAGAGATTACATCGGAAGTAAATCAAGAGTTAACTGATCTACAAAGGAATGGAGACTGGGATAGAGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCAAAGGCTCAACTTTTAGCAGTGAATAATTGGTACCGATTACGGCGAAGCCTAGAGATTATTAAGGTATGCTTGCAGTTTTTCAAGATACTGATATCTAGTGGATCACCTCCTTCTGCATTTCCGGTACCATATGATTCTTTCAGGGAACAAGGTGAATGTAATCGTGCGGAGGGTTCTGAGTCGTCTGATATTAACACGTATGGTGATGCAATGGAAGAAACCAACTCCTCAGAGTTAGACTATCAGTTTATGTGCTTTTTCCTTTCTAGTCATAGACTTGACCTCTATAAATCAATTGATTATCGGTGTGAAGATATGCTTTTAGGAAGGGATGGAATTTTGTCCGAGGCTCAATGGCTTCTTGATGAGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGGGTACTTACAAAGATGCAGAGAGCAAGGGGGCCAAAGTTCTGTTGCAGAATTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGAAATGAAAACATATACCAGTGGCTTGATGCTTCTAAACCTCTGGAAACCATTCTCAATTTCATCAATGAGGCTTACCACGATTGGAATGGAAGTCTTTTTGTGCCTGAACACTTGAGAATGTCGAGAGATGTTTCTGATCGCCGAGAAGCTTCACAACTGAAGTCATACCGCACCAAGAATAGGCATTTTGTGAAGGGGGAAGATTGTTCTCATATTCTGAACTGGATAAGCAAGACTCAAAGGTGA 1377 0.4343 MINNGVYILHTSLCFLENHLFRPLPCSFTFRRRFLVTASETKKKEKVVVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPNERKEVPHHLVDILHPCEDYSVGKFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPEITSEVNQELTDLQRNGDWDRAVQLVVKAGDPKAQLLAVNNWYRLRRSLEIIKVCLQFFKILISSGSPPSAFPVPYDSFREQGECNRAEGSESSDINTYGDAMEETNSSELDYQFMCFFLSSHRLDLYKSIDYRCEDMLLGRDGILSEAQWLLDEGLHPNSNSATKAIGYRQAMGYLQRCREQGGQSSVAEFYKFLFEFQKASRNFAKRQLTWFRNENIYQWLDASKPLETILNFINEAYHDWNGSLFVPEHLRMSRDVSDRREASQLKSYRTKNRHFVKGEDCSHILNWISKTQR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01078 458 Pfam IPP transferase 80 379 - -
Spst5g01078 458 Hamap tRNA dimethylallyltransferase [miaA]. 47 396 IPR018022 GO:0008033
Spst5g01078 458 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 387 IPR039657 -
Spst5g01078 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 367 IPR027417 -
Spst5g01078 458 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 213 IPR018022 GO:0008033
Spst5g01078 458 Gene3D - 44 447 IPR027417 -
Spst5g01078 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 175 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01078 Spst-Chr5 11783722 11790582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01078 50 337 C2H2 Transcription Factor Family AT2G27760 25.676 4.87e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01078 K00791 - gmx:100808814 779.63