Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01065 ATGGAGAGCACCGACTCATCGACCGGTTCACAGCAACAACCGCACTTGCCACCTGGATTTCGGTTCCACCCCACCGACGAGGAGCTTGTGGTTCACTACCTCAAGAAAAAAACAGCTTCGGCTCCTCTTCCTGTGGCCATAATAGCTGAGGTTGATCTCTACAAGTTCGATCCTTGGGAGCTACCCGCTAAGGCCACGTTTGGGGAGCAGGAGTGGTACTTCTTTAGTCCGAGGGACAGGAAGTATCCGAACGGCGCGAGGCCAAACAGGGCGGCCACATCTGGGTATTGGAAAGCCACTGGGACCGATAAGCCTGTGTTGACCTCTGGGGGAACCCAGAAGGTTGGGGTGAAGAAGGCTTTGGTTTTCTACGGAGGGAAACCCCCAAGAGGGATCAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCTCCCATGGAGCATGACAGGGAAGATTCAATGGAAGACATGATTGGAGGGATTCCTCCTTCCATCAACGTGGGCCACATGAGTGGGAGGTATCATCTTTCAAAGATGTCCACAGGCTACAGCAGTGCATTGTTGGAAAATGACCAGAACTTGTTGGAAGGGATGATGATAGGTAACGGATCAGTGATGAATACAAGTACTACTACTACTACTACACCTGGTGCCATGTCATCATCTCAGTTGGGAGCCTCAAACTCCAAGGCAGAGCTTTCTTTTGTGCCAACCATGACTCACTCTTCCAACACTTCTAAAAGAACACTGTCGTCGCTGTATTGGAATGATGAGGATGTGGCTGGCACCTCATCATCCAACAAGAGGTTCAATTTGGAAATTGGAGACAACAATCATGGGAGTGTTGTGAGAACTGATCAAGATAACGGCACTGCCACCTCTATTGCCACTCTGCTTAACCAGCTCCCTCAAACCCCTTCATTGCACCAACAATCAATGTTGGGATCAATAGGCGATGGAATACTTAGGACAACGTATCAAATACCAGGAATGAATTGGTATGCTTAG 1125 0.4871 MESTDSSTGSQQQPHLPPGFRFHPTDEELVVHYLKKKTASAPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMEHDREDSMEDMIGGIPPSINVGHMSGRYHLSKMSTGYSSALLENDQNLLEGMMIGNGSVMNTSTTTTTTPGAMSSSQLGASNSKAELSFVPTMTHSSNTSKRTLSSLYWNDEDVAGTSSSNKRFNLEIGDNNHGSVVRTDQDNGTATSIATLLNQLPQTPSLHQQSMLGSIGDGILRTTYQIPGMNWYA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01065 374 MobiDBLite consensus disorder prediction 1 21 - -
Spst5g01065 374 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Spst5g01065 374 MobiDBLite consensus disorder prediction 1 15 - -
Spst5g01065 374 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Spst5g01065 374 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Spst5g01065 374 PANTHER NAC TRANSCRIPTION FACTOR 56 16 192 - -
Spst5g01065 374 FunFam NAC transcription factor 56 25 182 - -
Spst5g01065 374 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01065 Spst-Chr5 11317080 11318701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01065 1 374 NAC Transcription Factor Family AT3G15510 54.145 2.53e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g01065 NAM 1.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01065 - - vra:106763825 693.73