Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01064 ATGGGAGTTTCAGAGAAAGACCCTCTTTCCCAGTTGAGTCTGCCTCCTGGTTTTCGGTTCTACCCCACCGACGAGGAGCTTCTCGTACAGTATCTCTGCCGCAAGGTCGCCGGCCACCATTTCTCTCTCCCAATTATTGCTGAGATTGATTTGTACAAGTTCGACCCGTGGATTCTTCCAAGCAAGGCGATTTTCGGGGAGAAAGAGTGGTACTTTTTCAGCCCTCGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGAGTAGCCGGGTCGGGTTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACAGAAGGAAGAAAAGTTGGCATAAAAAAAGCCCTCGTCTTTTACGTTGGCAAAGCTCCCAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTTGACTCTTCCCGAAAGACCACTGGCACCAAGCTGGATGATTGGGTTCTGTGTCGCATATACAAGAAGAACTCGAGTGCACAGAAGGCGGTGCAGAACGGCATGGTTTCGAGCAGGGAACACACTCAGTACAGCAACGGTTCCTCGTCGTCGTCTTCGTCCCACCTAGACGACGTTCTGGAATCGCTGCCTGCGATCGACGAACGGTGTTTCGCGATGCCACGTGTCAACGCAGTGCAGCAACAGCAGGAGGAGAAGGTGAACGTTCAGAACCTAGGTGCGGGTGGGTTGGTGGATTGGGCCAACCCTGCGGTTCTGAATTCCGTGTCTGATTTCGTTTCGGGGAACAATCAAGTAGTGCAGGACCATACTCAGGGGATGGTGAACTACAACGGGTGCAATGACCTTTATGTCCCCACCTTCTGCCACGTGGACTCCTCGCTTCCGCAAAAAATGGAGGAAGAGGTGCAAAGCGGCGTAAGAAACCAAAGCAATAACTCGTGGTTTCTTCAGAACGATTTCACACAGGGGTTTCAAAACTCGGTGGACACGTGTGGGTTTAAGTTCCCGGTTCAGCCGGTCGGGTTCGGGTTCAGACAATGA 1020 0.5225 MGVSEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWILPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKTTGTKLDDWVLCRIYKKNSSAQKAVQNGMVSSREHTQYSNGSSSSSSSHLDDVLESLPAIDERCFAMPRVNAVQQQQEEKVNVQNLGAGGLVDWANPAVLNSVSDFVSGNNQVVQDHTQGMVNYNGCNDLYVPTFCHVDSSLPQKMEEEVQSGVRNQSNNSWFLQNDFTQGFQNSVDTCGFKFPVQPVGFGFRQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01064 339 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 225 - -
Spst5g01064 339 MobiDBLite consensus disorder prediction 170 195 - -
Spst5g01064 339 FunFam NAC domain-containing protein 72-like 23 167 - -
Spst5g01064 339 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Spst5g01064 339 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Spst5g01064 339 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Spst5g01064 339 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01064 Spst-Chr5 11279276 11280562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01064 1 275 NAC Transcription Factor Family AT3G15500 62.069 9.33e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g01064 NAM 9.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01064 - - gmx:100170718 632.098