Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01055 ATGAGCAAAGCCCTGGGAGAAGACGAAGACGAAGAAGAACAAGAACAAGACCAAGACCAAGACCATGACTGTTTCTACGACTCACACGACCGTTTACTCTCTCTCTCTTCCTCCTGCTCCTGCTCCAACTCCAACTCCGACAACGAAGAAGCCGAAAACGACACCCAACCCCATCCAAACGACACACTCCCCAATTTTCCCCTCACCAACAACTACGACATATGGATCTCCCAACCATCCTCCGTCTCCGAGCGCCGCACGCGCCTCCTCCTCTCCCTAGGCCTCTCCTCCCTCACGCGCCCAAACCCTCAACCTTCTCCACGCGATCGCCTCTCCCCAATCCGATCCAAATCCGACACCACAACCGCCGCAGCCGCCGCCACCTCCTCCTCCGCCGTCGCCAACCCTAGGCCGCCCAACCCCAAGCCTCCGTCCGAAGAGCTCTGCACGATACGCGATCTCGACAACGGGAAGGAGTTTGTGGTGAACGACTGGGAAAATCTCCGGGAGGTTGCCACGGGGCGGCACTTGACGATGGAGGAGTTCGAGATGACGGTGGGGCACTCCCCCATCGTTCAGGAACTAATGCGGAGGCAGAATGTTGAAGAGGCTAGCGTGGATTCTAATGCGAGTGGCTCCAAGGTGAAGAAGAAAGGAGGGGGGTGGTTGAAGAGTATCAAGAGTGTCGCGAGCTCCGTCGCCGGGTACAGGGATCGCCGGAGCAGCGATGAGAGGGACACCTCGTCGGAGAAGGGTGGCCGGCGGTCCAGCTCCGCCACCGACGACAGCCAGGACGGGACGTTTCACGGCCCGGAAAGGGTTAGAGTGAAGCAGTATGGGAAGAGTTGCAAGGAGGTGACGGCGCTTTACAAGAGCCAGGAGATTCAGGCGCATAGTGGGTCTATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTATTTGGCGAGTGCTGGTGAGGATTGCGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGCTGCTGCTGCTGGATAGGGAGAAGGGGGAGGATGGGGGAAATGTGAATATGTTTTTGGTGGTGAATGGGTCGCCGGAGACGACTGCTGCGGCAATGCTGTCGCCGCTCAGGGATGTGGAGAGGAAGAGGAAGGGGAGGTCCAGTGTGAGTAGGAAGTCCTTGAGCCTGGACCAGTTTGTCGTGCCGCAGACTGTGTTTGCACTCACTGACAAACCCGTTTGCTCCTTTCAGGGACATCTACATGATGTGCTTGACCTCTCATGGTCCAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATCTTTCTAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACTGATCTGCACGAAATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAGAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCATAAAAAAATTACTGGTTTCCAGTTTGCCCCTGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCAAGAATACGGGTGGTTGATGGTGTTGACCTGGTTCATAAGTTTAAAGGCTTTCGGAATGCAACTAGCCCAATTTCAGCATCCCTCACAGCAAATGGTAAATATGTTGTCGCAGCAAGTGAGGACTCCCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCCAACAGAAGTAAAGGTGTCACTGTCACGCGATCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCGTTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGAACAACCCGAGCTTGATAACAATGCTGATGAGGTCTCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTTACCGAGGGTTCAAGATCTGCATCTGGTTACAGCAATAGTCCACGCCATGCAACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTCAGTATGGATTTCTCTAATGGGTTAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTACCACTTCGAATATAA 2361 0.5057 MSKALGEDEDEEEQEQDQDQDHDCFYDSHDRLLSLSSSCSCSNSNSDNEEAENDTQPHPNDTLPNFPLTNNYDIWISQPSSVSERRTRLLLSLGLSSLTRPNPQPSPRDRLSPIRSKSDTTTAAAAATSSSAVANPRPPNPKPPSEELCTIRDLDNGKEFVVNDWENLREVATGRHLTMEEFEMTVGHSPIVQELMRRQNVEEASVDSNASGSKVKKKGGGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQDGTFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGGNVNMFLVVNGSPETTAAAMLSPLRDVERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAVPWPGMGDAWDMHDTFSGEQPELDNNADEVSSANHPPTPVEENFVTEGSRSASGYSNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGLSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01055 786 PANTHER WD REPEAT DOMAIN 44 15 783 IPR040324 -
Spst5g01055 786 MobiDBLite consensus disorder prediction 664 709 - -
Spst5g01055 786 SUPERFAMILY WD40 repeat-like 290 622 IPR036322 GO:0005515
Spst5g01055 786 MobiDBLite consensus disorder prediction 1 66 - -
Spst5g01055 786 Pfam WD domain, G-beta repeat 448 485 IPR001680 GO:0005515
Spst5g01055 786 Pfam WD domain, G-beta repeat 407 442 IPR001680 GO:0005515
Spst5g01055 786 Pfam WD domain, G-beta repeat 583 620 IPR001680 GO:0005515
Spst5g01055 786 Pfam WD domain, G-beta repeat 294 326 IPR001680 GO:0005515
Spst5g01055 786 Gene3D - 372 647 IPR015943 GO:0005515
Spst5g01055 786 MobiDBLite consensus disorder prediction 237 258 - -
Spst5g01055 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Spst5g01055 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 452 IPR001680 GO:0005515
Spst5g01055 786 Gene3D - 262 354 IPR015943 GO:0005515
Spst5g01055 786 PRINTS G protein beta WD-40 repeat signature 472 486 IPR020472 -
Spst5g01055 786 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Spst5g01055 786 PRINTS G protein beta WD-40 repeat signature 430 444 IPR020472 -
Spst5g01055 786 MobiDBLite consensus disorder prediction 669 709 - -
Spst5g01055 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 452 486 - -
Spst5g01055 786 FunFam Transducin/WD40 repeat-like superfamily protein 253 360 - -
Spst5g01055 786 ProSiteProfiles Trp-Asp (WD) repeats profile. 452 486 IPR001680 GO:0005515
Spst5g01055 786 MobiDBLite consensus disorder prediction 96 135 - -
Spst5g01055 786 MobiDBLite consensus disorder prediction 31 50 - -
Spst5g01055 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 412 446 - -
Spst5g01055 786 MobiDBLite consensus disorder prediction 96 149 - -
Spst5g01055 786 FunFam WD repeat-containing protein 44 393 659 - -
Spst5g01055 786 MobiDBLite consensus disorder prediction 234 274 - -
Spst5g01055 786 SMART WD40_4 288 327 IPR001680 GO:0005515
Spst5g01055 786 SMART WD40_4 488 526 IPR001680 GO:0005515
Spst5g01055 786 SMART WD40_4 533 578 IPR001680 GO:0005515
Spst5g01055 786 SMART WD40_4 579 620 IPR001680 GO:0005515
Spst5g01055 786 SMART WD40_4 405 443 IPR001680 GO:0005515
Spst5g01055 786 SMART WD40_4 446 485 IPR001680 GO:0005515
Spst5g01055 786 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01055 Spst-Chr5 10988906 10994414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01055 400 617 U-box Gene Family AT1G04510 27.311 1.72e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01055 K20241 - gmx:100815065 1275.77